Browse Element(s) Details


OsAffx.3070.1.S1_at

Description tigr:9630.m05404
TID=OsAffx.3070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5449011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0000166molecular_functionnucleotide binding
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3070.1.S1_at--991--6351Chr02:33363679..33363703 (25 bp)
GATGCCATTCACCACTATTTCTTCA
LOC_Os02g54490
OsAffx.3070.1.S1_at--555--1471Chr02:33363718..33363742 (25 bp)
AGAATTGCTTCCTCTTTATCCTATC
LOC_Os02g54490
OsAffx.3070.1.S1_at--122--10351Chr02:33363732..33363756 (25 bp)
TTTATCCTATCACGTCATCGGTTGA
LOC_Os02g54490
OsAffx.3070.1.S1_at--949--6471Chr02:33364164..33364188 (25 bp)
GATACCCGATGGATCCTTGAACTTG
LOC_Os02g54490
OsAffx.3070.1.S1_at--477--9811Chr02:33364208..33364232 (25 bp)
TAAAGGACTTCTCTAACTCTTCTGC
LOC_Os02g54490
OsAffx.3070.1.S1_at--941--8091Chr02:33364237..33364261 (25 bp)
GGACCATCTTCTTCAGGATTTCTAT
LOC_Os02g54490
OsAffx.3070.1.S1_at--548--6111Chr02:33364282..33364306 (25 bp)
GAGTGCGTTGATGTATCTCTTTACA
LOC_Os02g54490
OsAffx.3070.1.S1_at--107--1591Chr02:33364834..33364858 (25 bp)
AGCTCCAGTTGGACACCGACTATGG
LOC_Os02g54490
OsAffx.3070.1.S1_at--612--2431Chr02:33364862..33364886 (25 bp)
AAAAGTTCGTAGCATACCTCACGCC
LOC_Os02g54490
OsAffx.3070.1.S1_at--801--6171Chr02:33365018..33365042 (25 bp)
GAGGAGTGGCTTGTGTCTTTTCATC
LOC_Os02g54490
OsAffx.3070.1.S1_at--922--3931Chr02:33365044..33365068 (25 bp)
CGGCGGCATGCTTTGGTTTATATCC
LOC_Os02g54490
Target Sequence 
GATGCCATTCACCACTATTTCTTCACAAATACATTGCCAAGAATTGCTTCCTCTTTATCCTATCACGTCATCGGTTGACT
TGTCATCAACCTGTATTCTGACATCAGTGTCATTCTATAAGGATGAAGATTCTCAGAATAGTGGGTCTTCATATAGCTTG
ACTGACTATATATGCTTCAAGATACCCGATGGATCCTTGAACTTGAAGAATTGCATTGGTGTGATAAAGGACTTCTCTAA
CTCTTCTGCCAGCGGACCATCTTCTTCAGGATTTCTATTGCATATACCTGATGAATATGAGTGCGTTGATGTATCTCTTT
ACAAGATGGAGAACTTCTCTTTTGTGCCTCTCTCAAGGATGTTCCCTTCAAATATTTACAGTGTACAAGAGCTGTCGGCA
CAGGAGCTCCAGTTGGACACCGACTATGGGAAAAAAGTTCGTAGCATACCTCACGCCGTGTCCACTCCACTGGCAGTCAG
TGCCTCAAGAGGAGTGGCTTGTGTCTTTTCATCTCGGCGGCATGCTTTGGTTTATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis