Browse Element(s) Details


OsAffx.21289.1.S1_at

Description gb:NM_193179.1
DB_XREF= gi:34913441
GEN=P0702H08.9
TID=OsAffx.21289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702H08.9 (P0702H08.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g544101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g111901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21289.1.S1_at--831--5331Chr01:19402493..19402517 (25 bp)
GAAGTTTGTAAAGGCCACATCTCAC
NONE
OsAffx.21289.1.S1_at--49--9032Chr04:3533234..3533258 (25 bp)
TGCAAACCCGGTTGAAACTCGCTGT
NONE
OsAffx.21289.1.S1_at--1039--5271Chr01:19400840..19400864 (25 bp)
GAAGGCGAACCACTTAAGCGGTCCG
NONE
OsAffx.21289.1.S1_at--885--26712Chr12:19339461..19339485 (25 bp)
AAGCGGTCCGCCTGCAAAAATACCT
NONE
OsAffx.21289.1.S1_at--1140--102512Chr11:26393818..26393838 (21 bp)
TTTGCAGGCGGACCGCTTAAGCAGT
NONE
OsAffx.21289.1.S1_at--508--3092Chr11:26393777..26393801 (25 bp)
AATAGACACCACAGCACATCGATTT
NONE
OsAffx.21289.1.S1_at--692--11Chr01:19400666..19400750 (25 bp)
ATCGATTTTTTATAACTTCCTCAGC
NONE
OsAffx.21289.1.S1_at--859--1631Chr01:19399796..19400240 (25 bp)
AGCGGGATTTGCTTTGTCATCGTCC
NONE
OsAffx.21289.1.S1_at--541--7111Chr01:19399781..19399805 (25 bp)
GTCATCGTCCCATTTTACCATTTTG
NONE
OsAffx.21289.1.S1_at--492--7751Chr01:19399739..19399763 (25 bp)
GGTGAGGAGCCAAACTTAACTGCTA
NONE
OsAffx.21289.1.S1_at--92--2631Chr01:19399713..19399737 (25 bp)
AACCTGTACTATCTTACCACAGTCC
NONE
Target Sequence 
GAAGTTTGTAAAGGCCACATCTCACCCTCGCAAGGAAAGACATACCACCAGTGGGAGGAGTGCATTTATGCAACTTCAAG
AGAAAAGGGTTGGAAAAGATCCTGTTCTTTGTGGATATGACCATTGGAGCCAAATGGCTGCCTACAAAAATGCAAACCCG
GTTGAAACTCGCTGTCCACCTGCGAAGGCGAACCACTTAAGCGGTCCGCCTGCAAAAATACCTTTATTTTTGCAGGCGGA
CCGCTTAAGCAGTCCGCCTGCGAAAATCGGCATGGATATAAATAGACACCACAGCACATCGATTTTTTATAACTTCCTCA
GCACCGGTGATGGGAGCGGCGGAAACCGACGACGGCGAGGCGCTGAGGCGGCGGGGTCGGCGGCGACAATGACAAGGCGG
TGGGGTCGACGGCGGCAACGGCGAGGCAGCGGGATTTGCTTTGTCATCGTCCCATTTTACCATTTTGATGCAGGGGAATT
GAGTGGTGAGGAGCCAAACTTAACTGCTAAAACCTGTACTATCTTACCACAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis