Browse Element(s) Details


Os.14993.1.A1_at

Description gb:CA759545
DB_XREF= gi:25803584
DB_XREF=BR060012B20G11.ab1
CLONE=BR060012B20G11.ab1
TID=Os.14993.1
CNT=16
FEA=mRNA
TIER=Stack
STK=7
UG=Os.14993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPT1b mRNA for 26S proteasome regulatory particle triple-A ATPase subunit1b, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5434010/1126S protease regulatory subunit 7, putative, expressed
LOC_Os05g497701/11CTP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54290NANA2+33289993..33290331BRUSHY protein 1, putative
LOC_Os02g54300OsAffx.3064.1.S1_at11/112+33293866..33294282hypothetical protein
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0003883molecular_functionCTP synthase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14993.1.A1_at--364--891Chr02:33310278..33310302 (25 bp)
AGGCCTGATACCTTAGATCCTGCAC
LOC_Os02g54340
Os.14993.1.A1_at--664--1471Chr02:33310222..33310246 (25 bp)
AGAATTTGGCTTACCTGACCTGGAG
LOC_Os02g54340
Os.14993.1.A1_at--762--1071Chr02:33310199..33310223 (25 bp)
AGGGCCGTACCCAAATATTCAAGAT
LOC_Os02g54340
Os.14993.1.A1_at--394--2571Chr02:33310158..33310182 (25 bp)
AACTGTGAGCGCGATATCCGTTTCG
LOC_Os02g54340
Os.14993.1.A1_at--866--6891Chr02:33309864..33309888 (25 bp)
GTATCAGAAGTTCAGCGCGACTCCA
LOC_Os02g54340
Os.14993.1.A1_at--47--9811Chr02:33309825..33309849 (25 bp)
TAACTAAACCGTTGTTGCTCCCATT
LOC_Os02g54340
Os.14993.1.A1_at--891--9891Chr02:33309800..33309824 (25 bp)
TACTATGGCCCATGAGATTGTCTCT
LOC_Os02g54340
Os.14993.1.A1_at--723--6591Chr02:33309785..33309809 (25 bp)
GATTGTCTCTGGCTGTCTGCAAAGA
LOC_Os02g54340
Os.14993.1.A1_at--851--6831Chr02:33309752..33309776 (25 bp)
GTTTCTTCTCGGAATTGTGCATCTT
LOC_Os02g54340
Os.14993.1.A1_at--332--7331Chr02:33309736..33309760 (25 bp)
GTGCATCTTTGTGGCGACCATGTCA
LOC_Os02g54340
Os.14993.1.A1_at--522--5851Chr05:28471235..28471257 (22 bp)
GACCATGTCATCTTGTACCAGTTCT
LOC_Os05g49770
Target Sequence 
AGGCCTGATACCTTAGATCCTGCACTTNTACGTCCTGGTCGTTTGGACAGGAAGGTAGAATTTGGCTTACCTGACCTGGA
GGGCCGTACCCAAATATTCAAGATACATACACGCACCATGAACTGTGAGCGCGATATCCGTTTCGAGCTGCTGGCTCGCC
TCTGCCCCAACTCAACTGGAGCTGATATAAGGAGTGTCTGCACAGAAGCTGGCATGTATGCGATTCGCGCCCGACGGAAA
ACAGTGACTGAGAAGGACTTNCCTTGATGCTGTAAACAAGGTCATCAAAGGGTATCAGAAGTTCAGCGCGACTCCAAAAT
ACATGGTGTATAACTAAACCGTTGTTGCTCCCATTTACTATGGCCCATGAGATTGTCTCTGGCTGTCTGCAAAGATTGTT
GTTGTTTCTTCTCGGAATTGTGCATCTTTGTGGCGACCATGTCATCTTGTACCAGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14993.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis