Browse Element(s) Details


OsAffx.3068.1.S1_x_at

Description tigr:9630.m05393
TID=OsAffx.3068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5439011/11hypro1, putative
LOC_Os09g263001/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3068.1.S1_x_at--307--4731Chr02:33325216..33325240 (25 bp)
GCTGGTGTCGCTCGAGATCATCGCC
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--962--8711Chr02:33325211..33325235 (25 bp)
TGTCGCTCGAGATCATCGCCCACGG
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--955--7192Chr09:15891440..15891460 (21 bp)
GTCGTGGTGCTCAACTGCACGGAGA
LOC_Os09g26300
OsAffx.3068.1.S1_x_at--549--8231Chr02:33325146..33325170 (25 bp)
GGCAAGACGCACTCCTACTTCTCGT
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--900--5771Chr02:33325068..33325092 (25 bp)
GACGACTCGTACTACCGCCTGGCGT
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--130--4211Chr02:33325012..33325036 (25 bp)
GCGCGACCTGTACCACGGGTTCCCG
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--1010--1791Chr02:33324971..33324995 (25 bp)
ACCCGAGGTCGCAGTTCATGTCGGG
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--486--6151Chr02:33324967..33324991 (25 bp)
GAGGTCGCAGTTCATGTCGGGCATG
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--452--7991Chr02:33324824..33324848 (25 bp)
GGAGTAACAGGTACGGCGAGGAGAC
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--620--3771Chr02:33324738..33324762 (25 bp)
CTCGTGGCGGACACCGTCGTCGTGC
LOC_Os02g54390
OsAffx.3068.1.S1_x_at--74--9711Chr02:33324677..33324701 (25 bp)
TCAAATTCTTCAACGCCACACAGGG
LOC_Os02g54390
Target Sequence 
GCTGGTGTCGCTCGAGATCATCGCCCACGGCGACGTCGTGGTGCTCAACTGCACGGAGAACATGGACGACGGCAAGACGC
ACTCCTACTTCTCGTCCCTCCCGGCGCTGTTCGCCGACGCGCCGTACGACTACGTCGGCAAGATCGACGACGACTCGTAC
TACCGCCTGGCGTCGCTCGCCGACACGCTCCGCGACAAGCCGCGGCGCGACCTGTACCACGGGTTCCCGGCGCCGTGCCA
CGCCGACCCGAGGTCGCAGTTCATGTCGGGCATGGGGTACATCGTGTCGTGGGACGTGGCGGCGTGGGTGGCGGCGACGG
AGGCGCTGCGGGGCGACGTGAAGGGGCCCGAGGACGAGGTGTTCGGCCGGTGGCTGCGCCGCGGCGGCAAGGGGAGTAAC
AGGTACGGCGAGGAGACGCGGATGTACGACTACCTCGACGGCGGGATGCGGGAGGGGGTGAACTGCTTCCGCCACGCGCT
CGTGGCGGACACCGTCGTCGTGCACAAGCTCAAGGACCGCCTCAAGTGGGCGCGCACGCTCAAATTCTTCAACGCCACAC
AGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3068.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis