Browse Element(s) Details


OsAffx.3066.1.S1_at

Description tigr:9630.m05389
TID=OsAffx.3066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5435010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54290NANA2+33289993..33290331BRUSHY protein 1, putative
LOC_Os02g54300OsAffx.3064.1.S1_at11/112+33293866..33294282hypothetical protein
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3066.1.S1_at--970--3871Chr02:33314474..33314498 (25 bp)
CTGTAGGGATGCTCGTGCTGTTCAC
LOC_Os02g54350
OsAffx.3066.1.S1_at--845--4731Chr02:33314458..33314482 (25 bp)
GCTGTTCACTCGAATGTTGCAGTCT
LOC_Os02g54350
OsAffx.3066.1.S1_at--678--2011Chr02:33314254..33314275 (22 bp)
ACTAGTCAGATTCAGTACTCCATTT
LOC_Os02g54350
OsAffx.3066.1.S1_at--593--10411Chr02:33314231..33314255 (25 bp)
TTATCAGTTGACTCATCTCGCGGAA
LOC_Os02g54350
OsAffx.3066.1.S1_at--632--5531Chr02:33314209..33314233 (25 bp)
GAAACGGCATGGCTAATTCTTCTCC
LOC_Os02g54350
OsAffx.3066.1.S1_at--81--9751Chr02:33314196..33314220 (25 bp)
TAATTCTTCTCCGATGTTTGGCGTT
LOC_Os02g54350
OsAffx.3066.1.S1_at--254--8671Chr02:33314153..33314177 (25 bp)
TGTGGTGCGGCAACCTGATTATGGT
LOC_Os02g54350
OsAffx.3066.1.S1_at--715--6551Chr02:33314020..33314161 (25 bp)
GATTATGGTTCCCATGGCATGCCCA
LOC_Os02g54350
OsAffx.3066.1.S1_at--679--851NONE
ATGGCATGCCCAGAACTTGCAGGTC
NONE
OsAffx.3066.1.S1_at--1095--1031Chr02:33313987..33314011 (25 bp)
AGGTCCATTTCGTCAGTGCACCGGC
LOC_Os02g54350
OsAffx.3066.1.S1_at--494--8331Chr02:33313965..33313989 (25 bp)
GGCTCCAGTCAGATGGTCCGGACAA
LOC_Os02g54350
Target Sequence 
CTGTAGGGATGCTCGTGCTGTTCACTCGAATGTTGCAGTCTGAATTCATCAATACTAGTCAGATTCAGTACTCCATTTAT
CAGTTGACTCATCTCGCGGAAACGGCATGGCTAATTCTTCTCCGATGTTTGGCGTTTGCCTTCTTCTCCGATGCTGTGGT
GCGGCAACCTGATTATGGTTCCCATGGCATGCCCAGAACTTGCAGGTCCATTTCGTCAGTGCACCGGCTCCAGTCAGATG
GTCCGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis