Browse Element(s) Details


OsAffx.3065.1.S1_at

Description tigr:9630.m05384
TID=OsAffx.3065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54270OsAffx.22004.1.S1_at1/112+33269694..33272939retrotransposon protein, putative, unclassified
LOC_Os02g54280OsAffx.24863.1.S1_x_at6/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51970.1.S1_at2/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280Os.51049.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.8166.1.S1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.26082.3.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54280OsAffx.2147.1.A1_at1/112+33273645..33289238retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g54290NANA2+33289993..33290331BRUSHY protein 1, putative
LOC_Os02g54300OsAffx.3064.1.S1_at11/112+33293866..33294282hypothetical protein
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3065.1.S1_at--232--6131Chr02:33296597..33296621 (25 bp)
GAGGGATTGACTGCGCAAGCCCATC
LOC_Os02g54310
OsAffx.3065.1.S1_at--202--5171Chr02:33296611..33296635 (25 bp)
GCAAGCCCATCTTAGGCGTCAAGAA
LOC_Os02g54310
OsAffx.3065.1.S1_at--687--671Chr02:33296806..33296830 (25 bp)
ATGAACTCTTGGAGCCAGCGAGGCC
LOC_Os02g54310
OsAffx.3065.1.S1_at--350--5331Chr02:33296840..33296864 (25 bp)
GAAGTGCTGTTCTTGCGATCGGCCT
LOC_Os02g54310
OsAffx.3065.1.S1_at--162--6411Chr02:33296856..33296880 (25 bp)
GATCGGCCTGCTGACTGGATAACAT
LOC_Os02g54310
OsAffx.3065.1.S1_at--509--8571Chr02:33296871..33296895 (25 bp)
TGGATAACATCATGCTGCTCGTTGA
LOC_Os02g54310
OsAffx.3065.1.S1_at--821--9091Chr02:33296886..33296910 (25 bp)
TGCTCGTTGATGCTATGCTCGTATT
LOC_Os02g54310
OsAffx.3065.1.S1_at--751--4791Chr02:33296902..33296926 (25 bp)
GCTCGTATTGCATGCCGGACAAGTT
LOC_Os02g54310
OsAffx.3065.1.S1_at--597--6111Chr02:33297105..33297129 (25 bp)
GAGTGCGACATTTTCGTGCTCAGAA
LOC_Os02g54310
OsAffx.3065.1.S1_at--171--1451Chr02:33297126..33297150 (25 bp)
AGAAGCATGTTACCTCTGGCTGACC
LOC_Os02g54310
OsAffx.3065.1.S1_at--913--2491Chr02:33297171..33297195 (25 bp)
AACAGGCTATTCACGTGTGGCTATC
LOC_Os02g54310
Target Sequence 
GAGGGATTGACTGCGCAAGCCCATCTTAGGCGTCAAGAAATGACATTTGAACCAAATATGTGCCACAGAGGTATAATCAA
GGAGAGAGTGGATGAACTCTTGGAGCCAGCGAGGCCTTCCTCTCCGAAGTGCTGTTCTTGCGATCGGCCTGCTGACTGGA
TAACATCATGCTGCTCGTTGATGCTATGCTCGTATTGCATGCCGGACAAGTTTCATCAGAAGCACAAGCGAGGACATAGC
CGGGAACTCTGCCGCGCGCAAGGTGCCATTGGCCTGCTCAATCCCCGGAGTCCGTTGGAGGAGGAAACGAGGTACCTGAT
GAAAAATGACATGCTCTGCAAGCGAGAAATTATTCTACAGGTTGAGGACGAGGAGAGCGGGAGAACACGGGAGTGCGACA
TTTTCGTGCTCAGAAGCATGTTACCTCTGGCTGACCTGTGGAACAGGAAGCGCTTAAACAGGCTATTCACGTGTGGCTAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis