Browse Element(s) Details


Os.4986.1.S1_at

Description gb:AK121768.1
DB_XREF= gi:37991391
TID=Os.4986.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092B03, full insert sequence.
FL= gb:AK121768.1 gb:AK063859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5447010/1160S ribosomal protein L33-B, putative, expressed
LOC_Os05g155101/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4986.1.S1_at--174--3951Chr02:33353863..33353887 (25 bp)
CGGCACGAACTACCGCTGCATCTGG
LOC_Os02g54470
Os.4986.1.S1_at--603--7571Chr02:33354048..33354072 (25 bp)
GGGCGCAAGGTCAGAGTCTTCATGT
LOC_Os02g54470
Os.4986.1.S1_at--685--9651Chr02:33354058..33354082 (25 bp)
TCAGAGTCTTCATGTACCCGAGCAG
LOC_Os02g54470
Os.4986.1.S1_at--1088--8731Chr02:33354070..33354091 (22 bp)
TGTACCCGAGCAGCATCTAAAGACT
LOC_Os02g54470
Os.4986.1.S1_at--810--5931NONE
GAGCAGCATCTAAAGACTCTTGAAG
NONE
Os.4986.1.S1_at--1161--3752Chr02:33355276..33355300 (25 bp)
CTCTTAGATTTTACTTCTGGCTGAA
LOC_Os02g54470
Os.4986.1.S1_at--316--9071Chr02:33355347..33355371 (25 bp)
TGCTGTTCCCTGAGAACCCCTGGAA
LOC_Os02g54470
Os.4986.1.S1_at--260--5971Chr02:33355358..33355382 (25 bp)
GAGAACCCCTGGAAGTTCTCCGTAG
LOC_Os02g54470
Os.4986.1.S1_at--885--831Chr02:33355438..33355462 (25 bp)
ATGGAGTCAGGGTTGGAACTTGTAA
LOC_Os02g54470
Os.4986.1.S1_at--1057--8771Chr02:33355476..33355500 (25 bp)
TGTTTCACAGCATCTATCTTCTTCG
LOC_Os02g54470
Os.4986.1.S1_at--795--10151Chr02:33355490..33355514 (25 bp)
TATCTTCTTCGTATCATTTGCTCGC
LOC_Os02g54470
Target Sequence 
CGGCACGAACTACCGCTGCATCTGGGGCAAGGTCACCCGCCCCCATGGCAACTCCGGCGTCGTCCGCGCCAAGTTCAAGT
CCAACCTGCCCCCCGCTTCCATGGGGCGCAAGGTCAGAGTCTTCATGTACCCGAGCAGCATCTAAAGACTCTTGAAGTGT
GGAGGATGTTGCTTATCTCTCTTAGATTTTACTTCTGGCTGAAAATGTCTTGAAAGGAGCCGTATTCATGTTGAGTTTGC
AAGTTGAACTGCTGTTCCCTGAGAACCCCTGGAAGTTCTCCGTAGTTTTGATGTCGAATGTATGCACCACTTCTATTATA
TTATGTCATATGGACTTATGATGGAGTCAGGGTTGGAACTTGTAAGCTTGATTTGNTCATGTTTCACAGCATCTATCTTC
TTCGTATCATTTGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis