Browse Element(s) Details


Os.7331.1.A1_at

Description gb:AU100756
DB_XREF= gi:9865006
DB_XREF=AU100756
CLONE=C12791
TID=Os.7331.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.7331 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47940 (A.thaliana) T47940 hypothetical protein F2A19.80 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5450010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7331.1.A1_at--684--10391Chr02:33374112..33374136 (25 bp)
TTTTGGTGGATCTCTTTCGACATGA
LOC_Os02g54500
Os.7331.1.A1_at--993--10631Chr02:33374127..33374151 (25 bp)
TTCGACATGATTTGCGACTGTGGAA
LOC_Os02g54500
Os.7331.1.A1_at--45--7531Chr02:33374146..33374170 (25 bp)
GTGGAAAGCATATAACATCACCTTA
LOC_Os02g54500
Os.7331.1.A1_at--662--391Chr02:33374162..33374269 (25 bp)
ATCACCTTACAGTCACATGATGTGT
LOC_Os02g54500
Os.7331.1.A1_at--310--6271Chr02:33374263..33374287 (25 bp)
GATGTGTTCAGAGAGTACCTTGATC
LOC_Os02g54500
Os.7331.1.A1_at--715--6011Chr02:33374273..33374297 (25 bp)
GAGAGTACCTTGATCTTCTTAACAC
LOC_Os02g54500
Os.7331.1.A1_at--464--6331Chr02:33374284..33374308 (25 bp)
GATCTTCTTAACACTTTGGAGGAGG
LOC_Os02g54500
Os.7331.1.A1_at--824--8551Chr02:33374300..33374324 (25 bp)
TGGAGGAGGAGCTTTCATCTGTTTC
LOC_Os02g54500
Os.7331.1.A1_at--1022--8071Chr02:33374307..33374331 (25 bp)
GGAGCTTTCATCTGTTTCTGATCTT
LOC_Os02g54500
Os.7331.1.A1_at--678--9471Chr02:33374317..33374341 (25 bp)
TCTGTTTCTGATCTTACATTGCAAA
LOC_Os02g54500
Os.7331.1.A1_at--478--8011Chr02:33374497..33374521 (25 bp)
GGAGGCCATGGCAGTTTTTTTTGCA
NONE
Target Sequence 
TTTTGGTGGATCTCTTTCGACATGATTTGCGACTGTGGAAAGCATATAACATCACCTTACAGTCACATGATGTGTTCAGA
GAGTACCTTGATCTTCTTAACACTTTGGAGGAGGAGCTTTCATCTGTTTCTGATCTTACATTGCAAAATAGACCAGTGTC
ATGAGTGCTGATGGCACTGGGAAATCAATTGGACGGATAACAGTTTAACCTGTGTTAATTTAACACATAGTAGATGGAGA
GGCGCAGGAATACAATGTAAATAGCATTTTTTGGGGGGATTTTCCCCTTAGAGCAACATCTTGGAGGCCATGGCAGTTTT
TTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7331.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis