Browse Element(s) Details


Os.55090.1.S1_at

Description gb:AK107467.1
DB_XREF= gi:32992676
TID=Os.55090.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-A12, full insert sequence.
FL= gb:AK107467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5454011/11Pathogenesis-related protein PR-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55090.1.S1_at--137--5951Chr02:33402529..33402553 (25 bp)
GAGCAGCCGCGGTACAACTACTGGA
LOC_Os02g54540
Os.55090.1.S1_at--746--7831Chr02:33402539..33402563 (25 bp)
GGTACAACTACTGGAGCAACAGCTG
LOC_Os02g54540
Os.55090.1.S1_at--741--3271Chr02:33402555..33402579 (25 bp)
CAACAGCTGCTACGGCGGCATGTGC
LOC_Os02g54540
Os.55090.1.S1_at--149--9931Chr02:33402565..33402589 (25 bp)
TACGGCGGCATGTGCGGGCACTACA
LOC_Os02g54540
Os.55090.1.S1_at--907--811Chr02:33402631..33402655 (25 bp)
ATGGTCGCCTGCTACAACGGCAGGG
LOC_Os02g54540
Os.55090.1.S1_at--190--8951Chr02:33402765..33402789 (25 bp)
TGACGGTGACCGATTCTTTCCTTGG
LOC_Os02g54540
Os.55090.1.S1_at--546--2651Chr02:33402848..33402872 (25 bp)
AACCAACCAATCTTGCTGTCTCATT
LOC_Os02g54540
Os.55090.1.S1_at--1127--10691Chr02:33402860..33402884 (25 bp)
TTGCTGTCTCATTCATTGCCATATG
LOC_Os02g54540
Os.55090.1.S1_at--300--371Chr02:33402926..33402950 (25 bp)
ATAATTCTTTCTTTCTACTGCACGC
LOC_Os02g54540
Os.55090.1.S1_at--1095--9911Chr02:33402941..33402965 (25 bp)
TACTGCACGCTGCAACATCTTTTTT
LOC_Os02g54540
Os.55090.1.S1_at--237--8851Chr02:33403046..33403070 (25 bp)
TGATCAGCTAATTGATTGGTCTGTT
LOC_Os02g54540
Target Sequence 
GAGCAGCCGCGGTACAACTACTGGAGCAACAGCTGCTACGGCGGCATGTGCGGGCACTACACCCAGATCATGTGGCGCGC
CACGCGCCGCGTCGGCTGCGCCATGGTCGCCTGCTACAACGGCAGGGGCACCTTCATCACCTGCAACTACGACCCGCCCG
GCAACTACGTCGGCATGCGCCCCTACTGACTACCCGCCCACCCACCCTCCGCCGCCGCTGCCGTCGCCGGTGATGGTGAC
GGTGACCGATTCTTTCCTTGGTCCGCTCTGCCGGCCGGCCGGGAGCACCGCGGCACACGGCAGGGCGACGCAGCGCAGCA
ACCAACCAATCTTGCTGTCTCATTCATTGCCATATGATGATGATGATGATGTTACAAGAGTACTACAACTGTACAAAATA
ATTCTTTCTTTCTACTGCACGCTGCAACATCTTTTTTTTTTGCTTTTTTACCTTTTTTCCTACCAAAATATATATTATGA
TGTTATTGGTAGGATCGGGGAAGCTACAATGAAATATGATCAGCTAATTGATTGGTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis