Browse Element(s) Details


OsAffx.24868.1.S1_at

Description tigr:9630.m05412
TID=OsAffx.24868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein 1 - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5457011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24868.1.S1_at--697--3831Chr02:33421783..33421807 (25 bp)
CTGCTGCAGATCAGCGAGGCGCAGC
LOC_Os02g54570
OsAffx.24868.1.S1_at--422--1231Chr02:33421758..33421782 (25 bp)
AGTTCGTGGTGCCGCAGACGCACCT
LOC_Os02g54570
OsAffx.24868.1.S1_at--1041--3911Chr02:33421613..33421637 (25 bp)
CGGCGTGAACGTGTTCCGCGGCTAC
LOC_Os02g54570
OsAffx.24868.1.S1_at--67--4712Chr08:11249989..11250079 (25 bp)
GCGGCGAGGCGTGGCAGCCGAGCGA
NONE
OsAffx.24868.1.S1_at--819--6211Chr02:33421540..33421564 (25 bp)
GAGGCGCAGCACTACGACTACGGCG
LOC_Os02g54570
OsAffx.24868.1.S1_at--1096--3391Chr02:33421534..33421558 (25 bp)
CAGCACTACGACTACGGCGCCAACG
LOC_Os02g54570
OsAffx.24868.1.S1_at--650--4691Chr02:33421504..33421528 (25 bp)
GCGGCGGGCAAGGAGTGCGGCCACT
LOC_Os02g54570
OsAffx.24868.1.S1_at--77--1311Chr02:33421473..33421497 (25 bp)
AGATGATGTGGCGCGACAGCACGCA
LOC_Os02g54570
OsAffx.24868.1.S1_at--960--8371Chr02:33421417..33421441 (25 bp)
GGCGAGACGCTCATGGCGTGCCACT
LOC_Os02g54570
OsAffx.24868.1.S1_at--826--5791Chr02:33421412..33421436 (25 bp)
GACGCTCATGGCGTGCCACTACGAG
LOC_Os02g54570
OsAffx.24868.1.S1_at--443--3491Chr02:33421406..33421430 (25 bp)
CATGGCGTGCCACTACGAGCCGCAG
LOC_Os02g54570
Target Sequence 
CTGCTGCAGATCAGCGAGGCGCAGCAGTTCGTGGTGCCGCAGACGCACCTCCGCGCGATCTACGGCCTGCACCCGCTCAA
GTGGAGCAGCGACCTGGCGGACCTGGCGACGCGGTGGGCGGACCAGTACAAGGGCGACTGCGCGGCGGCGTCGGCGGCGT
CGGCGGCGGGCGGCGTGAACGTGTTCCGCGGCTACGGCGGCGAGGCGTGGCAGCCGAGCGACGCGGTGGCGGCGTGGGCG
GAGGAGGCGCAGCACTACGACTACGGCGCCAACGCGTGCGCGGCGGGCAAGGAGTGCGGCCACTACAAGCAGATGATGTG
GCGCGACAGCACGCAGGTCGGCTGCGCCACCGTCACCTGCTCCTCCGGCGAGACGCTCATGGCGTGCCACTACGAGCCGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis