Browse Element(s) Details


Os.9331.1.S1_at

Description gb:AK120525.1
DB_XREF= gi:37990148
TID=Os.9331.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126P12, full insert sequence.
FL= gb:AK120525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5460011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.9331.1.S1_at--472--10411Chr02:33436741..33436765 (25 bp)
TTTTGGGTATTCAAGCCACCACCAC
LOC_Os02g54600
Os.9331.1.S1_at--1118--10331Chr02:33436714..33436738 (25 bp)
TTTAGTGATTTACCCTCATCATCAT
LOC_Os02g54600
Os.9331.1.S1_at--1134--6671Chr02:33436673..33436697 (25 bp)
GTTGCTCCTGGAATTAAGCTCCTCT
LOC_Os02g54600
Os.9331.1.S1_at--14--4291Chr02:33436632..33436656 (25 bp)
CCTCCTCAACTTTTCTTTAATCTCT
LOC_Os02g54600
Os.9331.1.S1_at--175--3151Chr02:33436577..33436601 (25 bp)
AATTAAGTTCATGTTCTTCCAAATG
LOC_Os02g54600
Os.9331.1.S1_at--1117--7451Chr02:33436448..33436472 (25 bp)
GTGTCCATCTGCTCCAGTTGCAGGA
LOC_Os02g54600
Os.9331.1.S1_at--324--2471Chr02:33436400..33436424 (25 bp)
AACAACATTGTGATGCTTTGCTGTG
LOC_Os02g54600
Os.9331.1.S1_at--155--4891Chr02:33436386..33436410 (25 bp)
GCTTTGCTGTGCTGGCTTCTTGGAT
LOC_Os02g54600
Os.9331.1.S1_at--991--8291Chr02:33436373..33436397 (25 bp)
GGCTTCTTGGATTCTGCAAATTGTG
LOC_Os02g54600
Os.9331.1.S1_at--276--9011Chr02:33436248..33436272 (25 bp)
TGAATCCTGATCCTTTCTCTCTGGT
LOC_Os02g54600
Os.9331.1.S1_at--666--5271Chr02:33436202..33436226 (25 bp)
GAATGAAATCATGAATTGCTCTCTT
LOC_Os02g54600
Target Sequence
TTTTGGGTATTCAAGCCACCACCACAATTTAGTGATTTACCCTCATCATCATCCCCTCTCTTGTNGCTGTTGCTCCTGGA
ATTAAGCTCCTCTCCTCTCCTCCCCTTCCCCTCCTCAACTTTTCTTTAATCTCTTCTTCTTCTTTTTTTTCTTCTTCTTC
TTCCAATTAAGTTCATGTTCTTCCAAATGATCATCATATAATATGGGTTGTTAAGAAAGCAATTTCTTCTTAATTAATTT
ATTTTCTAAAATCATCATTGGAGCAGTAGAAGTAGTAGTAGTAGTAGGTGGTGGTGTCCATCTGCTCCAGTTGCAGGAGG
AGGAGGAGAAGATGGTGACAAAACAACATTGTGATGCTTTGCTGTGCTGGCTTCTTGGATTCTGCAAATTGTGGGGGGTG
GATTGGATTGGATTGGATGGATCATGAATGGTTGGAGCAAGCAAATCTTGAAATGGGAACCAAATCAACTTTATTTTTTC
CTCCTCCTCTTCCTGAATCCTGATCCTTTCTCTCTGGTGGTTTTGAGGGGAGAATGATCGAATGAAATCATGAATTGCTC
TCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis