Browse Element(s) Details


Os.22775.1.S1_a_at

Description gb:AY224451.1
DB_XREF= gi:29367394
TID=Os.22775.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22775 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 23264 putative ATP synthetase alpha chain mRNA, complete cds.
PROD=putative ATP synthetase alpha chain
FL= gb:AY224451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5462411/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54600Os.9331.1.S1_at11/112+33436201..33438079Protein kinase domain containing protein, expressed
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22775.1.S1_a_at--260--7631Chr02:33453568..33453592 (25 bp)
GGGACAGTGGTCCATCTACTTCGAC
LOC_Os02g54624
Os.22775.1.S1_a_at--910--1371Chr02:33453654..33453678 (25 bp)
AGAGCGCTAGTACCTGCTTTGCAGG
LOC_Os02g54624
Os.22775.1.S1_a_at--506--10271Chr02:33453671..33453695 (25 bp)
TTTGCAGGCACCATCAGCAGTTGGT
LOC_Os02g54624
Os.22775.1.S1_a_at--985--5411Chr02:33453757..33453781 (25 bp)
GAAGCCCTTTGAATTCTGGACTCTG
LOC_Os02g54624
Os.22775.1.S1_a_at--1154--5331Chr02:33453792..33453816 (25 bp)
GAAGTTCTTGTCAATGTGAGCCAAA
LOC_Os02g54624
Os.22775.1.S1_a_at--389--6971Chr02:33453819..33453843 (25 bp)
GTAGCTGCTATTGTTGTGCTTTCTC
LOC_Os02g54624
Os.22775.1.S1_a_at--191--10851Chr02:33453901..33453925 (25 bp)
TTGGTTGTTTTGCTACACTACCCCA
LOC_Os02g54624
Os.22775.1.S1_a_at--1147--2011Chr02:33453917..33453941 (25 bp)
ACTACCCCATCTTTATTGGCGCTAT
LOC_Os02g54624
Os.22775.1.S1_a_at--3--10871Chr02:33453932..33453956 (25 bp)
TTGGCGCTATATACACCGCAATATT
LOC_Os02g54624
Os.22775.1.S1_a_at--902--2551Chr02:33454013..33454037 (25 bp)
AACTGAGCCTTCTGCTAGTGCATCA
LOC_Os02g54624
Os.22775.1.S1_a_at--111--5591Chr02:33454060..33454084 (25 bp)
GAAATGCAGTGCTCGCTAATCCAAG
LOC_Os02g54624
Target Sequence 
GGGACAGTGGTCCATCTACTTCGACTTCCCATAGTGTTGCTAGAGAAAACCATGGAGAACCAAATCCTGTTGATAGATCT
GCAACCAGAGCGCTAGTACCTGCTTTGCAGGCACCATCAGCAGTTGGTGCACCTAGTGCAGGACATACTTCAGGTGCTAG
AAGAAGTGATAACTATGTTCGCCGGCACAGAAGCCCTTTGAATTCTGGACTCTGGATTNCAATAGAAGTTCTTGTCAATG
TGAGCCAAATTGTAGCTGCTATTGTTGTGCTTTCTCTTTCAAGAAAGGAACATCCGCAAGCTCCATTATTTGAGTGGGTC
ATAGGTTATACAGTTGGTTGTTTTGCTACACTACCCCATCTTTATTGGCGCTATATACACCGCAATATTGTCAATGGTGA
AAATGAGCCAGCACATACACNTCAAGGCTCCTCTCAGAACAATTCAACTGAGCCTTCTGCTAGTGCATCAGAGCGTCGAA
GGAATGCTGCACGAAATGCAGTGCTCGCTAATCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22775.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis