Browse Element(s) Details


Os.53009.1.A1_x_at

Description gb:AK072337.1
DB_XREF= gi:32982360
TID=Os.53009.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043H01, full insert sequence.
FL= gb:AK072337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5464011/11Receptor family ligand binding region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53009.1.A1_x_at--1077--3971Chr02:33469566..33469590 (25 bp)
CGTGGGCGCGGCACTACGACCAGAA
LOC_Os02g54640
Os.53009.1.A1_x_at--436--9731Chr02:33469596..33469620 (25 bp)
TCAAGTCCCCGACGTTCAAGAGGAG
LOC_Os02g54640
Os.53009.1.A1_x_at--304--2971Chr02:33469643..33469667 (25 bp)
AATGGCAGCGAGTACGCCGCGAGCC
LOC_Os02g54640
Os.53009.1.A1_x_at--1160--1531Chr02:33469772..33469796 (25 bp)
AGCATCTCCACGAGCTCGGAGGAGA
LOC_Os02g54640
Os.53009.1.A1_x_at--700--2951Chr02:33469826..33469850 (25 bp)
GAGTTCGATAACTCGTCCGATCGGG
LOC_Os02g54640
Os.53009.1.A1_x_at--959--3971Chr02:33469863..33469887 (25 bp)
CGGGAACATCTCAACCGCGGTAGAT
LOC_Os02g54640
Os.53009.1.A1_x_at--192--7371Chr02:33469894..33469918 (25 bp)
GTGACATGGCAAGTTCTCCCAGTAG
LOC_Os02g54640
Os.53009.1.A1_x_at--520--3751Chr02:33469909..33469933 (25 bp)
CTCCCAGTAGACGTGTCCGGTAGGA
LOC_Os02g54640
Os.53009.1.A1_x_at--314--9851Chr02:33469955..33469979 (25 bp)
TACAAGTAGTGTGCAACCGTCTCCT
LOC_Os02g54640
Os.53009.1.A1_x_at--971--9251Chr02:33469976..33470000 (25 bp)
TCCTCGCCTGTAGATAGATCCTAGT
LOC_Os02g54640
Os.53009.1.A1_x_at--727--9651Chr02:33470032..33470056 (25 bp)
TCAGCAACTTGACCGATGAAGCATT
LOC_Os02g54640
Target Sequence 
CGTGGGCGCGGCACTACGACCAGAAGGACCTCAAGTCCCCGACGTTCAAGAGGAGGTGGAGCGACGAGTCCGTGAGGAAT
GGCAGCGAGTACGCCGCGAGCCGGACGCCGAGGTGGGGCGACGAGAGCCCGTGCAACGTCGCCGGCGCCGCCGACGCCGA
CGCCGGACGGATCCCGGAGGAAGTCGTCGGCGGCATGAGCCCGTTCAGCATCTCCACGAGCTCGGAGGAGAGGAACGGCG
CCGTGTCTCCGGCGGCGGCGGAGTTCGATAACTCGTCCGATCGGGCAGCGGTGGTGGCGGGAACATCTCAACCGCGGTAG
ATGTACATGTGACATGGCAAGTTCTCCCAGTAGACGTGTCCGGTAGGATATGAACATTGACAGGTCAAGTACAAGTAGTG
TGCAACCGTCTCCTCGCCTGTAGATAGATCCTAGTACTACTGTACTACTACCAGTAGATGAGAAATTCAGCAACTTGACC
GATGAAGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53009.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis