Browse Element(s) Details


Os.10955.1.S1_at

Description gb:AK103497.1
DB_XREF= gi:32988706
TID=Os.10955.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131A11, full insert sequence.
FL= gb:AK103497.1 gb:AK060351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5470011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10955.1.S1_at--667--2911Chr02:33489310..33489334 (25 bp)
AAGGATCTAGCTCCCCAGACAGAAG
LOC_Os02g54700
Os.10955.1.S1_at--1075--5391Chr02:33489331..33489355 (25 bp)
GAAGCTTTTGTGGACAGGCCTCCCA
LOC_Os02g54700
Os.10955.1.S1_at--495--8871Chr02:33489465..33489489 (25 bp)
TGATGAGAACTCTGTCCGTGTGACC
LOC_Os02g54700
Os.10955.1.S1_at--1084--1691Chr02:33489487..33489511 (25 bp)
ACCAATCTATCAGAGGACACCCGTG
LOC_Os02g54700
Os.10955.1.S1_at--289--9891Chr02:33489521..33489545 (25 bp)
TACTTGAGCTATTCCGCACATTTGG
LOC_Os02g54700
Os.10955.1.S1_at--982--8291Chr02:33489604..33489628 (25 bp)
GGCTTCGTCAACTTTGTTCACAGAG
LOC_Os02g54700
Os.10955.1.S1_at--282--6471Chr02:33489673..33489697 (25 bp)
GATAACCTTATCCTTCGTGTTGAGT
LOC_Os02g54700
Os.10955.1.S1_at--493--9751Chr02:33489718..33489742 (25 bp)
TAATTTTGTTACTCCCTGCAAGCGT
LOC_Os02g54700
Os.10955.1.S1_at--1045--5271Chr02:33489757..33489781 (25 bp)
GAATGTTCGATCAGTATGTCTCTTG
LOC_Os02g54700
Os.10955.1.S1_at--954--4951Chr02:33489802..33489826 (25 bp)
GCATATCCTGTGTCCTGAACTTAAG
LOC_Os02g54700
Os.10955.1.S1_at--114--2551Chr02:33489854..33489878 (25 bp)
AACTGAACTCGCAGCTATTTCCTAT
LOC_Os02g54700
Target Sequence 
AAGGATCTAGCTCCCCAGACAGAAGCTTTTGTGGACAGGCCTCCCACTGCTGATGGCTCTGGACCTCCAGGTGGCGCCGT
GAAGGGAGCATATGTTCCTCCAAGCATGAGGTCTGGTGCTGTTGATAGGGTTGGACATGACATGAGGCGTAGGAATGATG
AGAACTCTGTCCGTGTGACCAATCTATCAGAGGACACCCGTGAACCCGACCTACTTGAGCTATTCCGCACATTTGGNCCA
GTTAGCCGTGTCTACGTTGCGGTGGATCAGAAGACTGGAGCAAGCAGGGGGTTCGGCTTCGTCAACTTTGTTCACAGAGA
GGACGCTGAGAAGGCTATCAGCAAGCTCAATGGTTATGGTTATGATAACCTTATCCTTCGTGTTGAGTGGGCAACACCAA
GGCCAAATTAATTTTGTTACTCCCTGCAAGCGTTACATACTTTTCATGAATGTTCGATCAGTATGTCTCTTGAAATAGTA
CTTTTGGTTTGCGCATATCCTGTGTCCTGAACTTAAGCTGTACTATTTTTGCTTGGACGAGAATAACTGAACTCGCAGCT
ATTTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis