Browse Element(s) Details


OsAffx.3073.1.S1_at

Description tigr:9630.m05423
TID=OsAffx.3073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY087887 putative eukaryotic translation initiation factor 3 subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5469011/11initiation factor 3g, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0006413biological_processtranslational initiation
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3073.1.S1_at--28--991Chr02:33486077..33486101 (25 bp)
AGGAGATCGTTCTCGAGCGTCCAAG
LOC_Os02g54690
OsAffx.3073.1.S1_at--285--1631Chr02:33486092..33486501 (25 bp)
AGCGTCCAAGCGCACCAGGGAGCAA
LOC_Os02g54690
OsAffx.3073.1.S1_at--6--4531Chr02:33486539..33486563 (25 bp)
GCCGCGCTGATGGTTTGCAGGATCT
LOC_Os02g54690
OsAffx.3073.1.S1_at--913--5011Chr02:33486555..33486579 (25 bp)
GCAGGATCTGCAACGCCAAGGGCAA
LOC_Os02g54690
OsAffx.3073.1.S1_at--483--3211Chr02:33486571..33486595 (25 bp)
CAAGGGCAAGCACTGGACATCCAAG
LOC_Os02g54690
OsAffx.3073.1.S1_at--189--8531Chr02:33486584..33486608 (25 bp)
TGGACATCCAAGTGCCCCAACAAGG
LOC_Os02g54690
OsAffx.3073.1.S1_at--1005--5791Chr02:33486629..33486653 (25 bp)
GACGCTCTCGTCGACAACAATATTC
LOC_Os02g54690
OsAffx.3073.1.S1_at--864--4051Chr02:33486790..33486814 (25 bp)
CGAGGAAGACCTCCGCGAGCTGTTC
LOC_Os02g54690
OsAffx.3073.1.S1_at--169--4651Chr02:33486839..33486863 (25 bp)
GCGTACGTCGCGTTGGATCACCGGA
LOC_Os02g54690
OsAffx.3073.1.S1_at--1042--4051Chr02:33486916..33486940 (25 bp)
CGAGAGGGCCATCGCTAAGCTCAAT
LOC_Os02g54690
OsAffx.3073.1.S1_at--40--871Chr02:33486945..33486969 (25 bp)
ATGGCTACGATAGCCTCATCCTTAA
LOC_Os02g54690
Target Sequence 
AGGAGATCGTTCTCGAGCGTCCAAGCGCACCAGGGAGCAAATCGGAAGATCCACTCATCCCCGCACTGGACAAGGGCGCC
GCGCTGATGGTTTGCAGGATCTGCAACGCCAAGGGCAAGCACTGGACATCCAAGTGCCCCAACAAGGACTTCGCCCCTCT
GCAGCTCGACGCTCTCGTCGACAACAATATTCCTCCCAACTCTGGCGGCGACAATGGCGGCGGATCCCGGCCGGGCAAGT
ACGTGCCCCCGAAGCCGAGGGAGTCGGAAATGCGGCGGAGGAACGACGAGAACTCGGTCCGCGTCACCAACCTGTCGGAG
GACACCCGCGAGGAAGACCTCCGCGAGCTGTTCGGCAGCTTCGGCCCGCTCACCCGCGCGTACGTCGCGTTGGATCACCG
GACCGGGGAGAGCAGGGGGTTCGGCTTCCTCAGCTTCGTCTACAGGGAGGACGCCGAGAGGGCCATCGCTAAGCTCAATG
GCTATGGCTACGATAGCCTCATCCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis