Browse Element(s) Details


OsAffx.24869.1.S1_at

Description tigr:9630.m05421
TID=OsAffx.24869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24869.1.S1_at--140--9251Chr02:33481200..33481224 (25 bp)
TCCTACTAATTTCCATGTGAGCCCC
LOC_Os02g54670
OsAffx.24869.1.S1_at--642--8251Chr02:33482076..33482100 (25 bp)
GGCACCACTACATTCCATCATTTTA
LOC_Os02g54670
OsAffx.24869.1.S1_at--787--411Chr02:33482092..33482116 (25 bp)
ATCATTTTACATGCCTATCTCCGAC
LOC_Os02g54670
OsAffx.24869.1.S1_at--750--631Chr02:33482158..33482182 (25 bp)
ATGCATCCTGGTGAAGCAACCCAAT
LOC_Os02g54670
OsAffx.24869.1.S1_at--150--4471Chr02:33482204..33482269 (25 bp)
GCCTCTGGAGATATTGTTCGCGCAC
LOC_Os02g54670
OsAffx.24869.1.S1_at--863--511Chr02:33482275..33482299 (25 bp)
ATCGACCATGCATCTGCGACATTGG
LOC_Os02g54670
OsAffx.24869.1.S1_at--752--9151Chr02:33482289..33482313 (25 bp)
TGCGACATTGGCAACACAGTTCATG
LOC_Os02g54670
OsAffx.24869.1.S1_at--777--10411Chr02:33482398..33482422 (25 bp)
TTATTCCCGGTGACTTGTTCTGGTT
LOC_Os02g54670
OsAffx.24869.1.S1_at--539--7891Chr02:33482419..33482508 (25 bp)
GGTTCTTCTCCAACTTATGGCATGT
LOC_Os02g54670
OsAffx.24869.1.S1_at--306--8691Chr02:33482535..33482559 (25 bp)
TGTGCGTGCGACACTATTGGTGCCG
LOC_Os02g54670
OsAffx.24869.1.S1_at--633--4411Chr02:33482575..33482599 (25 bp)
GCCAGCAGCAGAACAATCAGTCGAA
LOC_Os02g54670
Target Sequence 
TCCTACTAATTTCCATGTGAGCCCCCGCCTCCGCCAAGGCCCACCTGCCATGGCACAGCCGGTGCATTGGCTGGCCCGCG
AGGCGGCAGATGACGACAGGATGGGGATTGGGGAGACGGCAGCGGCACGTGCGAGCCGCGGTGGCGTGGGGCACCACTAC
ATTCCATCATTTTACATGCCTATCTCCGACCATAGCCGGAAGGCTGATCAAACAGCTTACTATAGAAGGCCATGCATCCT
GGTGAAGCAACCCAATAACTGGGCTGGAGCAGGGTTAGCCTCTGGAGATATTGTTCGCGCACCAGCCATCGACCATGCAT
CTGCGACATTGGCAACACAGTTCATGGTGTTGTCGGTGGGTAGGCATGGTTCTGGTAGGAGTGGGGGTGAGCGCGGTGTG
AAAGATGATGGTGCCGCTGAGCTCCCCTCCTTATTCCCGGTGACTTGTTCTGGTTCTTCTCCAACTTATGGCATGTTCGA
CAAGCTGGCTGCGGCTGCGTCGTGTGCGTGCGACACTATTGGTGCCGGCTGCGCCGCAGCAGGCCAGCAGCAGAACAATC
AGTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis