Browse Element(s) Details


OsAffx.12640.1.S1_at

Description tigr:9630.m05410
TID=OsAffx.12640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5455011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed
LOC_Os02g54520OsAffx.3071.1.S1_at11/112+33392995..33396981Myb-like DNA-binding domain containing protein
LOC_Os02g54530NANA2+33399166..33399736Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54540Os.55090.1.S1_at11/112+33402149..33403070Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54550OsAffx.12640.1.S1_at11/112+33406395..33408410F-box domain containing protein
LOC_Os02g54550OsAffx.661.1.S1_x_at1/112+33406395..33408410F-box domain containing protein
LOC_Os02g54560Os.54548.1.S1_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54560Os.54548.1.S1_x_at11/112+33419080..33420607Pathogenesis-related protein PR-1 precursor, putative, expressed
LOC_Os02g54570OsAffx.24868.1.S1_at11/112+33421376..33421912SCP-like extracellular protein, expressed
LOC_Os02g54580Os.27041.1.S1_at11/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54580Os.14686.1.S1_at1/112+33424114..33427882serine esterase family protein, expressed
LOC_Os02g54590Os.52868.1.S1_at10/112+33428231..33433233serine threonine kinase 1, putative, expressed
LOC_Os02g54590OsAffx.15330.1.S1_x_at1/112+33428231..33433233serine threonine kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12640.1.S1_at--843--9791Chr02:33407248..33407272 (25 bp)
TAAGCGGGCTTCTTGTCAATGCCAC
LOC_Os02g54550
OsAffx.12640.1.S1_at--309--9411Chr02:33407413..33407437 (25 bp)
TCTGGTTCCAACCTGAAAGCCCGAA
LOC_Os02g54550
OsAffx.12640.1.S1_at--850--9211Chr02:33407447..33407471 (25 bp)
TCCACTTCTCCGCAATCTGAGGATT
LOC_Os02g54550
OsAffx.12640.1.S1_at--924--771Chr02:33407498..33407522 (25 bp)
ATGTGACCTCATTTGGACGATGTTT
LOC_Os02g54550
OsAffx.12640.1.S1_at--296--6871Chr02:33407519..33407543 (25 bp)
GTTTGTGTTAGAAGCTGCACCCCTC
LOC_Os02g54550
OsAffx.12640.1.S1_at--1063--2911Chr02:33407547..33407568 (22 bp)
AAGGAGCTTCGCATATCGGTAACAG
LOC_Os02g54550
OsAffx.12640.1.S1_at--221--1371Chr02:33408119..33408143 (25 bp)
AGAGCACTCTTGTGGCAGCTTGGCA
LOC_Os02g54550
OsAffx.12640.1.S1_at--868--6531Chr02:33408210..33408234 (25 bp)
GATTTCAGGCACTACAATCTGCTGT
LOC_Os02g54550
OsAffx.12640.1.S1_at--689--3191Chr02:33408224..33408248 (25 bp)
CAATCTGCTGTTGGTCACTGTTGTT
LOC_Os02g54550
OsAffx.12640.1.S1_at--1002--1491Chr02:33408293..33408317 (25 bp)
AGCACACGCGGCTGTCAATTTGGAA
LOC_Os02g54550
OsAffx.12640.1.S1_at--85--10751Chr02:33408353..33408377 (25 bp)
TTGTCAGTATTACCCAACTACGTGG
LOC_Os02g54550
Target Sequence 
TAAGCGGGCTTCTTGTCAATGCCACCGGCATACGTACACTGCAAATGATTTTTGAGAGTGAAAAGATCTGGTTCCAACCT
GAAAGCCCGAAACATCTGGCTCCACTTCTCCGCAATCTGAGGATTGCATGTTTGGACAAGATTCACAAGGAATGTGACCT
CATTTGGACGATGTTTGTGTTAGAAGCTGCACCCCTCTTAAAGGAGCTTCGCATATCGGTAACAGAGCACTCTTGTGGCA
GCTTGGCAGCAGCGGATGTCATGAGGAAGCTACTGTACTGCAAGAAAAACAATATAGAGTGGCACATTGATTCTGATTTC
AGGCACTACAATCTGCTGTTGGTCACTGTTGTTGGTTTTGAGATCAAGGATAAATTTGTGAAACTCATAAAACGTCTAGC
ACACGCGGCTGTCAATTTGGAAGATATACATCTGGAGGATGAAGTCAAATGTGAGAATTGTCAGTATTACCCAACTACGT
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis