Browse Element(s) Details


OsAffx.13014.1.S1_at

Description tigr:9631.m02446
TID=OsAffx.13014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chaperonin, 10 kDa
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2505011/1110 kDa chaperonin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0051087molecular_functionchaperone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13014.1.S1_at--211--10391Chr03:14279436..14279460 (25 bp)
TTTTCTTTTCCGAATCACAAGGAAT
LOC_Os03g25050
OsAffx.13014.1.S1_at--256--10291Chr03:14279430..14279454 (25 bp)
TTTCCGAATCACAAGGAATGATGGG
LOC_Os03g25050
OsAffx.13014.1.S1_at--816--5271Chr03:14279415..14279439 (25 bp)
GAATGATGGGAACAATTCCCCTGTT
LOC_Os03g25050
OsAffx.13014.1.S1_at--915--6251Chr03:14279411..14279435 (25 bp)
GATGGGAACAATTCCCCTGTTCCAT
LOC_Os03g25050
OsAffx.13014.1.S1_at--559--5511Chr03:14279406..14279430 (25 bp)
GAACAATTCCCCTGTTCCATATAAA
LOC_Os03g25050
OsAffx.13014.1.S1_at--1068--2231Chr03:14279404..14279428 (25 bp)
ACAATTCCCCTGTTCCATATAAAAT
LOC_Os03g25050
OsAffx.13014.1.S1_at--38--3151Chr03:14279402..14279426 (25 bp)
AATTCCCCTGTTCCATATAAAATTG
LOC_Os03g25050
OsAffx.13014.1.S1_at--447--5511Chr03:14279378..14279402 (25 bp)
GAAAATAAGAAACCAGTGTCCCTGC
LOC_Os03g25050
OsAffx.13014.1.S1_at--375--3091Chr03:14279375..14279399 (25 bp)
AATAAGAAACCAGTGTCCCTGCCAC
LOC_Os03g25050
OsAffx.13014.1.S1_at--376--9791Chr03:14279373..14279397 (25 bp)
TAAGAAACCAGTGTCCCTGCCACTT
LOC_Os03g25050
OsAffx.13014.1.S1_at--711--1411Chr03:14279371..14279395 (25 bp)
AGAAACCAGTGTCCCTGCCACTTCA
LOC_Os03g25050
Target Sequence 
TTTTCTTTTCCGAATCACAAGGAATGATGGGAACAATTCCCCTGTTCCATATAAAATTGAAAATAAGAAACCAGTGTCCC
TGCCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis