Browse Element(s) Details


OsAffx.3318.1.S1_at

Description tigr:9631.m02450
TID=OsAffx.3318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2509011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3318.1.S1_at--317--5571Chr03:14305171..14305192 (22 bp)
GAAAGGCAAGATCATTACAAGTAGA
LOC_Os03g25090
OsAffx.3318.1.S1_at--132--6431Chr03:14305162..14305186 (25 bp)
GATCATTACAAGTAGAGGAAGATTC
LOC_Os03g25090
OsAffx.3318.1.S1_at--854--8191Chr03:14305146..14305170 (25 bp)
GGAAGATTCTACTTGCAATTAAGAT
LOC_Os03g25090
OsAffx.3318.1.S1_at--1042--10711Chr03:14305134..14305158 (25 bp)
TTGCAATTAAGATGCGGGCGGCGAC
LOC_Os03g25090
OsAffx.3318.1.S1_at--1084--8251Chr03:14305083..14305107 (25 bp)
GGCAGCGAGTCCTGCGCAGGTTCAC
LOC_Os03g25090
OsAffx.3318.1.S1_at--418--8371Chr03:14305048..14305072 (25 bp)
GGCGTTGGATCTTGGCACGCTCGAT
LOC_Os03g25090
OsAffx.3318.1.S1_at--185--10871Chr03:14305044..14305068 (25 bp)
TTGGATCTTGGCACGCTCGATCGGA
LOC_Os03g25090
OsAffx.3318.1.S1_at--165--431Chr03:14305040..14305064 (25 bp)
ATCTTGGCACGCTCGATCGGACCGG
LOC_Os03g25090
OsAffx.3318.1.S1_at--36--10871Chr03:14305037..14305061 (25 bp)
TTGGCACGCTCGATCGGACCGGATT
LOC_Os03g25090
OsAffx.3318.1.S1_at--2--1851Chr03:14305032..14305056 (25 bp)
ACGCTCGATCGGACCGGATTCAGTG
LOC_Os03g25090
OsAffx.3318.1.S1_at--261--4051Chr03:14305027..14305051 (25 bp)
CGATCGGACCGGATTCAGTGCTGCT
LOC_Os03g25090
Target Sequence 
GAAAGGCAAGATCATTACAAGTAGAGGAAGATTCTACTTGCAATTAAGATGCGGGCGGCGACGAGGCGACGATGGATTCG
CCGGCGCCGGCAGCGAGTCCTGCGCAGGTTCACCGGAGGGGGCGGCGTTGGATCTTGGCACGCTCGATCGGACCGGATTC
AGTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis