Browse Element(s) Details


OsAffx.25220.2.S1_at

Description tigr:9631.m02452
TID=OsAffx.25220.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed
LOC_Os03g25130Os.53209.1.S1_at11/113+14336791..14337939OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g25140Os.18146.1.S1_a_at11/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.54723.1.S1_at2/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.37075.1.S1_at1/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25220.2.S1_at--1061--9731Chr03:14317616..14317640 (25 bp)
TAATCCCCTGTATTCTAAAGCTCTC
LOC_Os03g25110
OsAffx.25220.2.S1_at--530--1571Chr03:14317634..14317658 (25 bp)
AGCTCTCGTAATAAACCGCACTGCA
LOC_Os03g25110
OsAffx.25220.2.S1_at--560--2431Chr03:14317889..14317913 (25 bp)
AAAAGCCGCAGTTCCGTGATGCTTT
LOC_Os03g25110
OsAffx.25220.2.S1_at--1121--7391Chr03:14317904..14317928 (25 bp)
GTGATGCTTTCTTATACCTTCTTGC
LOC_Os03g25110
OsAffx.25220.2.S1_at--694--4311Chr03:14317920..14317944 (25 bp)
CCTTCTTGCCAAGTATGCCAGCTAA
LOC_Os03g25110
OsAffx.25220.2.S1_at--401--151Chr03:14318946..14318970 (25 bp)
ATTATGATGCTATCCATGTGCGACG
LOC_Os03g25110
OsAffx.25220.2.S1_at--836--771Chr03:14318961..14318985 (25 bp)
ATGTGCGACGTGGTGATCTACTGAA
LOC_Os03g25110
OsAffx.25220.2.S1_at--723--5971Chr03:14319039..14319063 (25 bp)
GAGACACCCGACCTGAGTTTATCAA
LOC_Os03g25110
OsAffx.25220.2.S1_at--882--10491Chr03:14319072..14319096 (25 bp)
TTGCAAAGTGGATCCCCGAAGGTCG
LOC_Os03g25110
OsAffx.25220.2.S1_at--136--9451Chr03:14319094..14319118 (25 bp)
TCGGACTCTATTCATTGCCTCAAAT
LOC_Os03g25110
OsAffx.25220.2.S1_at--896--2991Chr03:14320037..14320061 (25 bp)
AATGATCTCACCCTCTGTGATGATC
LOC_Os03g25110
Target Sequence 
TAATCCCCTGTATTCTAAAGCTCTCGTAATAAACCGCACTGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAGGATCGCA
AAAGCCGCAGTTCCGTGATGCTTTCTTATACCTTCTTGCCAAGTATGCCAGCTAAAAAATTGAGGGATGCAGCAAATAAG
ATGAAACAAATACTTGGTGATTATGATGCTATCCATGTGCGACGTGGTGATCTACTGAAAAATAGAAAAGACAGATTTGG
TGTTGAGCGGAGCCTTCATCCTCATCTGGATAGAGACACCCGACCTGAGTTTATCAAAAAGCGAATTGCAAAGTGGATCC
CCGAAGGTCGGACTCTATTCATTGCCTCAAATGAAAGAACACCAGGCTTCTTTTCTCCTCTGTCAGACAAGTACAAATTA
GCATACTCGTCCAACTTTAGTAGCATATTGGAGCCAGTAATTGAGAACAATTACCAGCTATTCATGGTGGAGAGATTAAT
GATGCGAGGAGCAAAGACATTCGTGAAGACAATGAAAGAATTTGACAATGATCTCACCCTCTGTGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25220.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis