Browse Element(s) Details


OsAffx.13015.1.S1_at

Description tigr:9631.m02453
TID=OsAffx.13015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HSF-type DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2512011/11heat shock transcription factor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed
LOC_Os03g25130Os.53209.1.S1_at11/113+14336791..14337939OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g25140Os.18146.1.S1_a_at11/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.54723.1.S1_at2/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.37075.1.S1_at1/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13015.1.S1_at--949--9251Chr03:14322318..14322342 (25 bp)
TCCTCTCGGAGATCCACCGGAGGAA
LOC_Os03g25120
OsAffx.13015.1.S1_at--529--8011Chr03:14322300..14322324 (25 bp)
GGAGGAAGTCGTCGTCTTGCTCACA
LOC_Os03g25120
OsAffx.13015.1.S1_at--548--5331Chr03:14322296..14322320 (25 bp)
GAAGTCGTCGTCTTGCTCACAGCCA
LOC_Os03g25120
OsAffx.13015.1.S1_at--798--1851Chr03:14322211..14322235 (25 bp)
ACGACGCCGAGGTCTCCTCCGGTTG
LOC_Os03g25120
OsAffx.13015.1.S1_at--700--1031Chr03:14322202..14322226 (25 bp)
AGGTCTCCTCCGGTTGGAGCAGCAG
LOC_Os03g25120
OsAffx.13015.1.S1_at--1157--1491Chr03:14322173..14322197 (25 bp)
AGCAGCCTACCATTTCCAGGAAGAG
LOC_Os03g25120
OsAffx.13015.1.S1_at--417--10271Chr03:14322161..14322185 (25 bp)
TTTCCAGGAAGAGTACTGCTCCTCT
LOC_Os03g25120
OsAffx.13015.1.S1_at--1068--931Chr03:14322156..14322180 (25 bp)
AGGAAGAGTACTGCTCCTCTCCGGC
LOC_Os03g25120
OsAffx.13015.1.S1_at--523--3731Chr03:14322005..14322029 (25 bp)
CTACTTCCTGCAGAACCACGTGGAG
LOC_Os03g25120
OsAffx.13015.1.S1_at--879--10651Chr03:14322001..14322025 (25 bp)
TTCCTGCAGAACCACGTGGAGCCAG
LOC_Os03g25120
OsAffx.13015.1.S1_at--543--1431Chr03:14321994..14322018 (25 bp)
AGAACCACGTGGAGCCAGTGGCGCC
LOC_Os03g25120
Target Sequence 
TCCTCTCGGAGATCCACCGGAGGAAGTCGTCGTCTTGCTCACAGCCACAGCCGCCGCCGCCATTCCCGATGCACCAGCAT
TACCCCCTCAGCCTCTTCTCGCCGCCGACGACGCCGAGGTCTCCTCCGGTTGGAGCAGCAGCAGCAGCAGCCTACCATTT
CCAGGAAGAGTACTGCTCCTCTCCGGCGGACTACGCCGGCGGCGGAGGCGACTTGCTGGCGGCGCTGTCGGAGGACAACC
GGCAGCTGCGGCGGCGCAACTCGCTGCTGCTGTCGGAGCTGGCGCACATGAGGAAGCTCTACAACGACATCATCTACTTC
CTGCAGAACCACGTGGAGCCAGTGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis