Browse Element(s) Details


Os.18146.1.S1_a_at

Description gb:AK065282.1
DB_XREF= gi:32975300
TID=Os.18146.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002M02, full insert sequence.
FL= gb:AK065282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2514011/11Peptidylprolyl isomerase PASTICCINO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed
LOC_Os03g25130Os.53209.1.S1_at11/113+14336791..14337939OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g25140Os.18146.1.S1_a_at11/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.54723.1.S1_at2/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.37075.1.S1_at1/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25150OsAffx.13016.1.S1_x_at9/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.13016.1.S1_at8/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.2.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.1.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25160NANA3+14365651..14366427Flavonoid 3',5'-hydroxylase 1, putative, expressed
LOC_Os03g25170NANA3+14371990..14372673retrotransposon protein, putative, unclassified
LOC_Os03g25180NANA3+14373710..14374554retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18146.1.S1_a_at--550--5611Chr03:14348858..14348882 (25 bp)
GACAAGTCCTCAGAGCCTGATGCTA
LOC_Os03g25140
Os.18146.1.S1_a_at--416--6131Chr03:14349091..14349115 (25 bp)
GAGGGCAACAAGACTGACACGACAG
LOC_Os03g25140
Os.18146.1.S1_a_at--1095--8371Chr03:14349121..14349145 (25 bp)
GGCGAGGCAGCGTCAACTGCTGACA
LOC_Os03g25140
Os.18146.1.S1_a_at--567--2311Chr03:14349159..14349183 (25 bp)
AAAGGAGGCTATTCCCCGTGCAGAT
LOC_Os03g25140
Os.18146.1.S1_a_at--657--3431Chr03:14349179..14349203 (25 bp)
CAGATTCAGGGTTGGCCTTCGAGGA
LOC_Os03g25140
Os.18146.1.S1_a_at--426--3611Chr03:14349195..14349219 (25 bp)
CTTCGAGGAAGAGAGGCCCGGACTT
LOC_Os03g25140
Os.18146.1.S1_a_at--326--4971Chr03:14349227..14349251 (25 bp)
GCATCTGGCCTTCAGCGAGTCGGAT
LOC_Os03g25140
Os.18146.1.S1_a_at--735--9351Chr03:14349259..14349283 (25 bp)
TCGCTTGGGCTCAACAGGTGCACAA
LOC_Os03g25140
Os.18146.1.S1_a_at--13--1511Chr03:14349322..14349346 (25 bp)
AGCAGCCAGAAAAGTCGCCCAGCAA
LOC_Os03g25140
Os.18146.1.S1_a_at--858--2351Chr03:14349345..14349369 (25 bp)
AAAGCCCTGGAACGCATTACACACG
LOC_Os03g25140
Os.18146.1.S1_a_at--75--2291Chr03:14349498..14349522 (25 bp)
AAATGCATTTGTGCCTGCCATGATA
LOC_Os03g25140
Target Sequence 
GACAAGTCCTCAGAGCCTGATGCTACAGCTGCCCTTAATAAACTTAAACAAACAATTCAGGAAACTGAAAAGAAAGCGAG
GAAGCAGTTCAAAGGGCTGTTCGACAAGAAGCCAGGCGAGATTTCCGAAGTAGGTGTAGGAGAGCCAGAGGGCAACAAGA
CTGACACGACAGGCTCAGGCGAGGCAGCGTCAACTGCTGACAGAGACACGGATGCAAAGGAGGCTATTCCCCGTGCAGAT
TCAGGGTTGGCCTTCGAGGAAGAGAGGCCCGGACTTCTCGCCCGCATCTGGCCTTCAGCGAGTCGGATCTTCTCCTCGCT
TGGGCTCAACAGGTGCACAATCCTCTGATGCNCCACCAGTATTCAAACCNCTACAAACAGCAGCCAGAAAAGTCGCCCAG
CAAAGCCCTGGAACGCATTACACACGCAAAATTATCNCCCTTGGATATATATCTCTAAAAATTATACTCCATTACATGGT
GTAGGCTGATGACCTATAAATGAGGTAGGCGTAGTAGTAACGAGTTAGTTAAGNACATACGGAGTATTACTGTGGAAATG
CATTTGTGCCTGCCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18146.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis