Browse Element(s) Details


OsAffx.13016.1.S1_at

Description tigr:9631.m02456
TID=OsAffx.13016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=defective flavonoid 3-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g251508/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25130Os.53209.1.S1_at11/113+14336791..14337939OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os03g25140Os.18146.1.S1_a_at11/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.54723.1.S1_at2/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25140Os.37075.1.S1_at1/113+14338136..14349540Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os03g25150OsAffx.13016.1.S1_x_at9/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.13016.1.S1_at8/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.2.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25150OsAffx.21820.1.S1_x_at1/113+14360154..14361924transposon protein, putative, unclassified, expressed
LOC_Os03g25160NANA3+14365651..14366427Flavonoid 3',5'-hydroxylase 1, putative, expressed
LOC_Os03g25170NANA3+14371990..14372673retrotransposon protein, putative, unclassified
LOC_Os03g25180NANA3+14373710..14374554retrotransposon protein, putative, unclassified
LOC_Os03g25190OsAffx.13020.1.S1_at11/113+14375854..14377149F-box domain containing protein
LOC_Os03g25200Os.47463.1.S1_x_at6/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g25200Os.14491.2.S1_x_at4/113+14380775..14384471transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13016.1.S1_at--863--9831Chr03:14360512..14360536 (25 bp)
TACAACTACCAGAACATGGTGTTCG
LOC_Os03g25150
OsAffx.13016.1.S1_at--94--3931Chr03:14360733..14360757 (25 bp)
CGGCCAGATCACCGTCAGCAAGCGG
LOC_Os03g25150
OsAffx.13016.1.S1_at--913--7331NONE
GTGCAGGGCGACGAGTCCAACAGCT
NONE
OsAffx.13016.1.S1_at--494--7571NONE
GGGCGACGAGTCCAACAGCTATAAG
NONE
OsAffx.13016.1.S1_at--693--5771NONE
GACGAGTCCAACAGCTATAAGGATA
NONE
OsAffx.13016.1.S1_at--992--10171Chr03:14361492..14361516 (25 bp)
TATAAGGATATGATCGTCTCGCTGT
LOC_Os03g25150
OsAffx.13016.1.S1_at--172--1011Chr03:14361496..14361520 (25 bp)
AGGATATGATCGTCTCGCTGTTGAC
LOC_Os03g25150
OsAffx.13016.1.S1_at--303--7311Chr03:14361523..14361547 (25 bp)
GTGCGGGGCTGTTCAACATCAGCGA
LOC_Os03g25150
OsAffx.13016.1.S1_at--1076--1131Chr03:14361584..14361608 (25 bp)
AGTCCAGGCCAAGTTGCGGCGGATC
LOC_Os03g25150
OsAffx.13016.1.S1_at--30--2831Chr03:14361594..14361618 (25 bp)
AAGTTGCGGCGGATCCACGACCAGT
LOC_Os03g25150
OsAffx.13016.1.S1_at--1153--7951Chr03:14361604..14361628 (25 bp)
GGATCCACGACCAGTTCGACGTCCT
LOC_Os03g25150
Target Sequence 
TACAACTACCAGAACATGGTGTTCGCCAACTACGGCGCCAGGTGGAAGCTGATGCGGAAGCTGGCGAGCGTCCACCTGCT
CGGCGCCCGCGCGCTCGCCGACTGGGCGGCGGTGCGCCGCGACGAGGCCCGCCGGCTGCTGCGCGGCGTGGCGGAGGCGT
CCGCCGCCGGCCGCCCCGTCGTCATCCCGGAGGTGCTCGTCTGCGCGCTCGCCAACATCGTCGGCCAGATCACCGTCAGC
AAGCGGGTGTTCGACGTGCAGGGCGACGAGTCCAACAGCTATAAGGATATGATCGTCTCGCTGTTGACGGGTGCGGGGCT
GTTCAACATCAGCGACTTCGTGCCGGCGCTGGCGTGGCTGGACCTGCAGGGAGTCCAGGCCAAGTTGCGGCGGATCCACG
ACCAGTTCGACGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis