Browse Element(s) Details


OsAffx.25219.1.S1_at

Description tigr:9631.m02449
TID=OsAffx.25219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2508011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein
LOC_Os03g25070Os.38188.1.A1_at10/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.51355.1.S1_at2/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25070Os.22775.1.S2_a_at1/113+14294936..14302259CDPK-related protein kinase, putative, expressed
LOC_Os03g25080OsAffx.25219.1.S1_at11/113+14302995..14304494F-box domain containing protein
LOC_Os03g25090OsAffx.3318.1.S1_at11/113+14304997..14306169hypothetical protein
LOC_Os03g25100OsAffx.10633.1.S1_at6/113+14309593..14314064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25110OsAffx.25220.2.S1_at11/113+14315946..14320099expressed protein
LOC_Os03g25120OsAffx.13015.1.S1_at11/113+14321484..14324367heat shock transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25219.1.S1_at--364--9491Chr03:14303482..14303506 (25 bp)
TCTGCCTGCGAGACGAGACGTTCAG
LOC_Os03g25080
OsAffx.25219.1.S1_at--306--891Chr03:14303413..14303437 (25 bp)
AGGCCTTCCACCTGAGCGAGCTCAA
LOC_Os03g25080
OsAffx.25219.1.S1_at--329--9711Chr03:14303392..14303416 (25 bp)
TCAACGGTGTACTGTGCCTGGCCCA
LOC_Os03g25080
OsAffx.25219.1.S1_at--702--2791Chr03:14303279..14303303 (25 bp)
AAGAGGTGCGTGTTCACGTCGACGA
LOC_Os03g25080
OsAffx.25219.1.S1_at--253--4671Chr03:14303272..14303296 (25 bp)
GCGTGTTCACGTCGACGAGCATGTT
LOC_Os03g25080
OsAffx.25219.1.S1_at--931--731Chr03:14303252..14303276 (25 bp)
ATGTTCATCCCGATCGCGCTGTTTC
LOC_Os03g25080
OsAffx.25219.1.S1_at--889--531Chr03:14303240..14303264 (25 bp)
ATCGCGCTGTTTCATCATGGCGGCG
LOC_Os03g25080
OsAffx.25219.1.S1_at--679--5291Chr03:14303091..14303115 (25 bp)
GAATGGCATGACGTACCATGATGAT
LOC_Os03g25080
OsAffx.25219.1.S1_at--612--671Chr03:14303068..14303092 (25 bp)
ATGAACAGGGCAGGCACACCGTGGT
LOC_Os03g25080
OsAffx.25219.1.S1_at--593--3231Chr03:14303054..14303078 (25 bp)
CACACCGTGGTAGTAGGGAGTTCTT
LOC_Os03g25080
OsAffx.25219.1.S1_at--30--7651Chr03:14303029..14303053 (25 bp)
GGGAGAATCTACATTACTACAAACT
LOC_Os03g25080
Target Sequence 
TCTGCCTGCGAGACGAGACGTTCAGCGTCGTCGCGCCGCCGCCGCCATGCCGGCCGCCGTTCCTCCACGAGGCCTTCCAC
CTGAGCGAGCTCAACGGTGTACTGTGCCTGGCCCACGCCGCCGGCGCCGGCGACGAGGGGACGTCGACCTCGTCGTCGGT
GGTGATCTGGATGACGGAGGACGGCGTGAGCCCGCGGTGGAGCAAGAGGTGCGTGTTCACGTCGACGAGCATGTTCATCC
CGATCGCGCTGTTTCATCATGGCGGCGGCGGAGGCGGCGGGGTGATCGGCAAGAGAGGTGATCTCTTGTTCTTCCTCGGC
GACGATGACGACGGAGAAGACGAGAGCAGAATCGGAGAGGGGAAGGAGGAGGAAAAGCAGGTGGTTTGCTTGAATGGCAT
GACGTACCATGATGATGAACAGGGCAGGCACACCGTGGTAGTAGGGAGTTCTTGGGAGAATCTACATTACTACAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis