Browse Element(s) Details


OsAffx.25252.1.S1_at

Description tigr:9631.m02706
TID=OsAffx.25252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2740011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27400OsAffx.25252.1.S1_at11/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400OsAffx.25903.3.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400Os.46459.1.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27410OsAffx.13075.1.S1_at10/113+15703266..15703888hypothetical protein
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25252.1.S1_at--700--8771Chr03:15697791..15697815 (25 bp)
TGTTTGTTCAAATAGCTGCACGAGC
LOC_Os03g27400
OsAffx.25252.1.S1_at--756--2331Chr03:15697756..15697780 (25 bp)
AAAGAGTCCTACTTTATGGCTGCTA
LOC_Os03g27400
OsAffx.25252.1.S1_at--810--6491Chr03:15697672..15697696 (25 bp)
GATATGGATGACTTGCCTACTTCAC
LOC_Os03g27400
OsAffx.25252.1.S1_at--535--2791Chr03:15697577..15697600 (24 bp)
AAGATGCAACTGTTCACGCTAGTAT
LOC_Os03g27400
OsAffx.25252.1.S1_at--483--5391Chr03:15697410..15697434 (25 bp)
GAAGCACATCACATTGACACACTGA
LOC_Os03g27400
OsAffx.25252.1.S1_at--652--8931Chr03:15697244..15697264 (21 bp)
TGACGCCAATAGCAACCACTTCTAT
LOC_Os03g27400
OsAffx.25252.1.S1_at--318--3251Chr03:15697232..15697256 (25 bp)
CAACCACTTCTATTCGAATGCCTGA
LOC_Os03g27400
OsAffx.25252.1.S1_at--397--791Chr03:15697113..15697135 (23 bp)
ATGGGTCATTTTCAGGTCCCAATGA
LOC_Os03g27400
OsAffx.25252.1.S1_at--1144--5751Chr03:15697090..15697114 (25 bp)
GACGCAACCTTACATGTTTTGGCCA
LOC_Os03g27400
OsAffx.25252.1.S1_at--1085--10471Chr03:15697063..15697087 (25 bp)
TTACAATTCAGTCCCAAGTGCTTCA
LOC_Os03g27400
OsAffx.25252.1.S1_at--595--6651Chr03:15697026..15697050 (25 bp)
GTTGATATAACTGCTCTGATGACTG
LOC_Os03g27400
Target Sequence 
TGTTTGTTCAAATAGCTGCACGAGCTGCAAACTCAAAAGAGTCCTACTTTATGGCTGCTAATTGTGCAGAGAAATTAGCA
CAGGATGTGGAAAAATGCTTACAAATTAGATCTGATCCAGATATGGATGACTTGCCTACTTCACAAGATGCAACTGTTCA
CGCTAGTATAATTCCAAAACAAAACGAAGAGGTTGTTAAACCAAGAGGTATAAAGGTCAAGCCAAAGACTATTTTAGGAT
CAAGAAGACATGTTAGTGGTTTAGATAAATCAAAAAGAAGGAGAACAAAGAACAAAGTTCAATCTGTACCAGAAGCACAT
CACATTGACACACTGACGCCAATAGCAACCACTTCTATTCGAATGCCTGAACAATATGATAACTTCATGGGTCATTTTCA
GGTCCCAATGACGCAACCTTACATGTTTTGGCCACATTACAATTCAGTCCCAAGTGCTTCACCGCAGCCATTCGTTGATA
TAACTGCTCTGATGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis