Browse Element(s) Details


OsAffx.3342.1.S1_at

Description tigr:9631.m02708
TID=OsAffx.3342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cyclin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2742011/11Cyclin, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27400OsAffx.25252.1.S1_at11/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400OsAffx.25903.3.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400Os.46459.1.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27410OsAffx.13075.1.S1_at10/113+15703266..15703888hypothetical protein
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3342.1.S1_at--800--6871Chr03:15709662..15709686 (25 bp)
GTATTCGACGCAGAGACTATCCATA
LOC_Os03g27420
OsAffx.3342.1.S1_at--1078--6031Chr03:15709632..15709656 (25 bp)
GAGATCATTGTGCTAACCACTCTGA
LOC_Os03g27420
OsAffx.3342.1.S1_at--698--9691Chr03:15709580..15709604 (25 bp)
TCACTTACATTGGTCACTTCTTGGA
LOC_Os03g27420
OsAffx.3342.1.S1_at--154--1731Chr03:15709530..15709554 (25 bp)
ACCAGTGAACTGATATCTCGATGCA
LOC_Os03g27420
OsAffx.3342.1.S1_at--195--2351Chr03:15709371..15709393 (23 bp)
AAAGCAACTGTGTTCCTGAGATTCA
LOC_Os03g27420
OsAffx.3342.1.S1_at--773--471Chr03:15709315..15709339 (25 bp)
ATCTGTAGTTGCTGACGGAGGCCGC
LOC_Os03g27420
OsAffx.3342.1.S1_at--1134--10751Chr03:15709286..15709310 (25 bp)
TTGACTTTGGCGGTGTTCTTGAATC
LOC_Os03g27420
OsAffx.3342.1.S1_at--5--9591Chr03:15709270..15709294 (25 bp)
TCTTGAATCTTCTAAACTCCCTGTA
LOC_Os03g27420
OsAffx.3342.1.S1_at--938--5091Chr03:15709096..15709120 (25 bp)
GCACTGCAAGTCCATCTGGTGTGTT
LOC_Os03g27420
OsAffx.3342.1.S1_at--896--3311Chr03:15709068..15709092 (25 bp)
CACATCATGTTTCACCTCTAAGAGT
LOC_Os03g27420
OsAffx.3342.1.S1_at--738--6311Chr03:15709040..15709064 (25 bp)
GATGACTACTCAATCCCAGGAACAT
LOC_Os03g27420
Target Sequence 
GTATTCGACGCAGAGACTATCCATAGGATGGAGATCATTGTGCTAACCACTCTGAAATGGAGAATGCAAGCTGTGACCCC
TTTCACTTACATTGGTCACTTCTTGGACAAGATCAATGAGGGAAATCGGATAACCAGTGAACTGATATCTCGATGCACCG
AGATCATACTCAGCACCATGAAAGCAACTGTGTTCCTGAGATTCAGACCTTCTGAGATTGCCACAGCTGTAGCTCTATCT
GTAGTTGCTGACGGAGGCCGCGTTCTTGACTTTGGCGGTGTTCTTGAATCTTCTAAACTCCCTGTAGATAAGGACAATGT
GGGGAGATGCCATCAAGCAATGCAAGAGATGGCATTGGTGATGCAAAACAGCACTGCAAGTCCATCTGGTGTGTTGGACA
CATCATGTTTCACCTCTAAGAGTGATGATGACTACTCAATCCCAGGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis