Browse Element(s) Details


Os.14128.1.S1_at

Description gb:AK071779.1
DB_XREF= gi:32981802
TID=Os.14128.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110F23, full insert sequence.
FL= gb:AK071779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g274508/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27410OsAffx.13075.1.S1_at10/113+15703266..15703888hypothetical protein
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14128.1.S1_at--53--2331Chr03:15730267..15730291 (25 bp)
AAAGGGCTTCTGTTACTTATGACAA
LOC_Os03g27450
Os.14128.1.S1_at--433--671Chr03:15730285..15730309 (25 bp)
ATGACAATATGCAGCTTGGCGGATT
LOC_Os03g27450
Os.14128.1.S1_at--159--3611Chr03:15730299..15730323 (25 bp)
CTTGGCGGATTTCAGCGACTACATG
LOC_Os03g27450
Os.14128.1.S1_at--1103--2111Chr03:15730319..15730343 (25 bp)
ACATGGTTCATCCTTCCAGATGGCA
LOC_Os03g27450
Os.14128.1.S1_at--86--2251Chr03:15730352..15730376 (25 bp)
AAATTGTTTGCCCTTGTGCGTTGGT
LOC_Os03g27450
Os.14128.1.S1_at--407--1051Chr03:15730382..15730406 (25 bp)
AGGTGATTCGTTTGGTTTATGAGCA
LOC_Os03g27450
Os.14128.1.S1_at--41--6911Chr03:15730421..15730445 (25 bp)
GTATCTAAAGATCCCCTTAGGAGTC
LOC_Os03g27450
Os.14128.1.S1_at--1065--6031Chr03:15730499..15730523 (25 bp)
GAGATCGTGCAACCTCTGTAATGTT
LOC_Os03g27450
Os.14128.1.S1_at--1099--10811Chr03:15730567..15730591 (25 bp)
TTGGAGTTCCATAGCATGATCTGTG
NONE
Os.14128.1.S1_at--765--711Chr03:15730582..15730606 (25 bp)
ATGATCTGTGGACTTGAGCTTCTGA
NONE
Os.14128.1.S1_at--18--4951NONE
GCATTGACAGGTTGCTCAACTTCCA
NONE
Target Sequence 
AAAGGGCTTCTGTTACTTATGACAATATGCAGCTTGGCGGATTTCAGCGACTACATGGTTCATCCTTCCAGATGGCACAC
CAACAAAATTGTTTGCCCTTGTGCGTTGGTGAGTGAGGTGATTCGTTTGGTTTATGAGCATGGTATTCTNCTCTGTATCT
AAAGATCCCCTTAGGAGTCGTNNTCATATGATTGCTTTTTTTGATACATGGAAAGTGTCCGTATAGAGGAACCAGAGATC
GTGCAACCTCTGTAATGTTCTTTGTGAATGGNNAAAAAAAAAGGTAAAGGAATCCNTTGTAATTGGAGTTCCATAGCATG
ATCTGTGGACTTGAGCTTCTGATTATAGTTCAGGAGCTAGAAGCTTAGAATTACAACTGAATGTAGCTGAATGTAGCATT
GACAGGTTGCTCAACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis