Browse Element(s) Details


OsAffx.13076.1.S1_at

Description tigr:9631.m02715
TID=OsAffx.13076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2749011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13076.1.S1_at--721--6231Chr03:15752988..15753012 (25 bp)
GATGGCTTCGGCGATCTTCAGGCTT
LOC_Os03g27490
OsAffx.13076.1.S1_at--318--10611Chr03:15752994..15753018 (25 bp)
TTCGGCGATCTTCAGGCTTGGCAAA
LOC_Os03g27490
OsAffx.13076.1.S1_at--575--431Chr03:15753001..15753025 (25 bp)
ATCTTCAGGCTTGGCAAAGAGGCGG
LOC_Os03g27490
OsAffx.13076.1.S1_at--571--10871Chr03:15753038..15753062 (25 bp)
TTGGCGCTGCGGACTCGAAGATGAT
LOC_Os03g27490
OsAffx.13076.1.S1_at--988--6271Chr03:15753063..15753087 (25 bp)
GATGATGGGCAACTCTTCGTCATGG
LOC_Os03g27490
OsAffx.13076.1.S1_at--622--2531Chr03:15753073..15753097 (25 bp)
AACTCTTCGTCATGGCGGGAACAAC
LOC_Os03g27490
OsAffx.13076.1.S1_at--526--4011Chr03:15753080..15753104 (25 bp)
CGTCATGGCGGGAACAACGACCGGA
LOC_Os03g27490
OsAffx.13076.1.S1_at--894--10331Chr03:15754764..15754788 (25 bp)
TTTCAACACTCCAGAGCACAACTTC
LOC_Os03g27490
OsAffx.13076.1.S1_at--266--5131Chr03:15754779..15754803 (25 bp)
GCACAACTTCGCCAATATTAGAGAA
LOC_Os03g27490
OsAffx.13076.1.S1_at--1146--2711Chr03:15754802..15754826 (25 bp)
AAGAATTGGCTGACTTTACCCTACA
LOC_Os03g27490
OsAffx.13076.1.S1_at--874--8931Chr03:15754812..15754836 (25 bp)
TGACTTTACCCTACAAGAAATTATA
LOC_Os03g27490
Target Sequence 
GATGGCTTCGGCGATCTTCAGGCTTGGCAAAGAGGCGGAGGACGACGGGCTTGGCGCTGCGGACTCGAAGATGATGATGA
TGGGCAACTCTTCGTCATGGCGGGAACAACGACCGGAGGAAGGCGATGGTGTTGGGGTGGGTGCAGGGTTTACGATTCCG
ACAGGCCCTTCCGTTTTGGGCGCTGGTGGAATTCGGAATTTCGCGAAATTCGGTGGAAAATCGAATGTTTTTTTCAACAC
TCCAGAGCACAACTTCGCCAATATTAGAGAAGAATTGGCTGACTTTACCCTACAAGAAATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis