Browse Element(s) Details


Os.12818.1.S1_at

Description gb:AK073726.1
DB_XREF= gi:32983749
TID=Os.12818.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058M13, full insert sequence.
FL= gb:AK106027.1 gb:AK073726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2746011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12818.1.S1_at--1035--5211Chr03:15733631..15733655 (25 bp)
GAATTTGCAGAACTTGCCCTTCTTG
LOC_Os03g27460
Os.12818.1.S1_at--659--2491Chr03:15733523..15733547 (25 bp)
AACAGATGTTTCAGGGACCGACCCT
LOC_Os03g27460
Os.12818.1.S1_at--488--10471Chr03:15733499..15733523 (25 bp)
TTACCGCTCTTGTTGTCGTTATTGT
LOC_Os03g27460
Os.12818.1.S1_at--553--9591Chr03:15733474..15733498 (25 bp)
TCTTGTGGCATTATCTCTTGTTGTA
LOC_Os03g27460
Os.12818.1.S1_at--282--6831Chr03:15733432..15733456 (25 bp)
GTTTCTAGTTACTTAGCTGGCGGTG
LOC_Os03g27460
Os.12818.1.S1_at--564--7731Chr03:15733411..15733435 (25 bp)
GGTGGAGTCCCATAGAAGTCCTATA
LOC_Os03g27460
Os.12818.1.S1_at--1160--371Chr03:15733281..15733305 (25 bp)
ATCACTTCGGTTTCTTCTAGGGCAA
LOC_Os03g27460
Os.12818.1.S1_at--532--3891Chr03:15733221..15733245 (25 bp)
CTGTGAGCTGTCTGTCTTTCTGAAT
LOC_Os03g27460
Os.12818.1.S1_at--847--2691Chr03:15733191..15733215 (25 bp)
AAGCTTCTTTTGTTACAGCCATGCA
LOC_Os03g27460
Os.12818.1.S1_at--509--9811Chr03:15733104..15733128 (25 bp)
TAACGGTTTTTGGTATGCCTGCTTA
LOC_Os03g27460
Os.12818.1.S1_at--326--4471Chr03:15733088..15733112 (25 bp)
GCCTGCTTATGATCCAGTGTTAATT
LOC_Os03g27460
Target Sequence 
GAATTTGCAGAACTTGCCCTTCTTGAGGGTTGACAATCTTGGGCGGATGCTGTAATGGGCTATGGCATTTGTTGTGCTGG
AGAAATGCTGTATGTTTAGCTGGGTCAAAACAGATGTTTCAGGGACCGACCCTTACCGCTCTTGTTGTCGTTATTGTTCT
TGTGGCATTATCTCTTGTTGTAGTAGTAGTTTACCTTGTGTTTCTAGTTACTTAGCTGGCGGTGGAGTCCCATAGAAGTC
CTATATGTGAGTTTGTGGTATCTCCAAATTAGCTGGGATATGTATTCTGTCTTAAGCAANACAAACTTGTGGAGTTCTCT
CAGGATGAATTTAGTGATTCATGGATGGGCGATCACTTCGGTTTCTTCTAGGGCAATGGCGAGACAAGTCACTGAGAGAA
AGTAAGTGAAGCTGTGAGCTGTCTGTCTTTCTGAATATACAAAGCTTCTTTTGTTACAGCCATGCATTTAGCTATTTGAT
AAGATTGACTTGGTTTTAATTCAATATTCTATTGTGAAGTTAATGCTGTAACGGTTTTTGGTATGCCTGCTTATGATCCA
GTGTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis