Browse Element(s) Details


OsAffx.25253.1.S1_at

Description tigr:9631.m02709
TID=OsAffx.25253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2743011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27400OsAffx.25252.1.S1_at11/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400OsAffx.25903.3.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27400Os.46459.1.S1_at1/113+15696988..15700431transposon protein, putative, unclassified
LOC_Os03g27410OsAffx.13075.1.S1_at10/113+15703266..15703888hypothetical protein
LOC_Os03g27420OsAffx.3342.1.S1_at11/113+15706040..15710921Cyclin, N-terminal domain containing protein
LOC_Os03g27430OsAffx.25253.1.S1_at11/113+15718849..15719594hypothetical protein
LOC_Os03g27440OsAffx.25254.1.S1_at11/113+15724063..15724668hypothetical protein
LOC_Os03g27450Os.14128.1.S1_at8/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27450Os.2213.2.S1_x_at1/113+15726036..15730581small GTP-binding protein domain containing protein, expressed
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25253.1.S1_at--59--8351Chr03:15719467..15719491 (25 bp)
GGCTGTACAGCTTCAAGAGCGCACG
LOC_Os03g27430
OsAffx.25253.1.S1_at--99--9871Chr03:15719462..15719486 (25 bp)
TACAGCTTCAAGAGCGCACGCGCGC
LOC_Os03g27430
OsAffx.25253.1.S1_at--243--9272Chr03:15719069..15719093 (25 bp)
TCCTCCTGCCGCTTCATGAGGACGA
LOC_Os03g27430
OsAffx.25253.1.S1_at--1013--691Chr03:15719054..15719078 (25 bp)
ATGAGGACGACCTCGTTGTCGAGCT
LOC_Os03g27430
OsAffx.25253.1.S1_at--1133--1851Chr03:15719048..15719072 (25 bp)
ACGACCTCGTTGTCGAGCTCCCTGG
LOC_Os03g27430
OsAffx.25253.1.S1_at--592--1592Chr03:15719033..15719057 (25 bp)
AGCTCCCTGGCCTTGAGCCAGAGCA
LOC_Os03g27430
OsAffx.25253.1.S1_at--1133--1351Chr03:15719014..15719038 (25 bp)
AGAGCAGGCTGTCCCTGACCTTGAT
LOC_Os03g27430
OsAffx.25253.1.S1_at--771--4731Chr03:15719007..15719031 (25 bp)
GCTGTCCCTGACCTTGATGTGGAGC
LOC_Os03g27430
OsAffx.25253.1.S1_at--758--7851Chr03:15718938..15718962 (25 bp)
GGTAGAAATCTAGTGAATCGGTCAA
LOC_Os03g27430
OsAffx.25253.1.S1_at--364--7351Chr03:15718926..15718950 (25 bp)
GTGAATCGGTCAATATGGCAAAGAA
LOC_Os03g27430
OsAffx.25253.1.S1_at--275--2751Chr03:15718906..15718930 (25 bp)
AAGAAAATATTTGGCATCGTTTGGG
LOC_Os03g27430
Target Sequence 
GGCTGTACAGCTTCAAGAGCGCACGCGCGCTGCAGAGCTCATGCACCAACTACAGGAGCGACCCAACCATCTCCATCTTC
AACGACATCAACCGGATCGCCGCCACTGCACTGGTGCCCTCCTTGCCGCCGCCGCAGCTCGCTGACCCGAGAACTCGCCT
CCTCCTGCCGCTTCATGAGGACGACCTCGTTGTCGAGCTCCCTGGCCTTGAGCCAGAGCAGGCTGTCCCTGACCTTGATG
TGGAGCAGCTGTGGGATGAGGGTATTTTAGTCAGCCCGGGTGCAAAAAATGGTAGAAATCTAGTGAATCGGTCAATATGG
CAAAGAAAATATTTGGCATCGTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis