Browse Element(s) Details


OsAffx.25332.1.S1_x_at

Description tigr:9631.m03136
TID=OsAffx.25332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative GRAS family transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3188011/11GRAS family transcription factor containing protein, expressed
LOC_Os07g398201/11short-root transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31839Os.12101.2.A1_a_at11/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.15659.1.S1_at2/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.26827.1.S1_at1/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31870OsAffx.13151.1.S1_x_at7/113+18177960..18178382hypothetical protein
LOC_Os03g31874NANA3+18182780..18183218NA
LOC_Os03g31880OsAffx.25332.1.S1_x_at11/113+18193626..18195632GRAS family transcription factor containing protein, expressed
LOC_Os03g31890NANA3+18197517..18200443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g31910NANA3+18204356..18208915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g31920NANA3+18210566..18211534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31930NANA3+18212268..18214571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31934NANA3+18220460..18220720hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009640biological_processphotomorphogenesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25332.1.S1_x_at--151--3271Chr03:18194160..18194184 (25 bp)
CAACTGCGTAAACGCGCTGCGCGGG
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--547--9511Chr03:18193966..18193990 (25 bp)
TCTCGGCGTACATGGACTCGCTGGA
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--1068--1992Chr07:23868366..23868612 (25 bp)
ACTCGCTGGAGGAGAGCTTCCCCAA
LOC_Os07g39820
OsAffx.25332.1.S1_x_at--718--2751Chr03:18193928..18193952 (25 bp)
AAGACAAGCAACGAGAGGCTGTCAC
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--412--2211Chr03:18193925..18193949 (25 bp)
ACAAGCAACGAGAGGCTGTCACTGG
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--673--3231Chr03:18193924..18193948 (25 bp)
CAAGCAACGAGAGGCTGTCACTGGA
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--2--9331Chr03:18193853..18193877 (25 bp)
TCCCAGTCCGCCGAGCGCCGGGAGA
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--797--9271Chr03:18193738..18193762 (25 bp)
TCCGGCGGTACAAGGAGGGCTGGTC
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--798--1071Chr03:18193723..18193747 (25 bp)
AGGGCTGGTCGATGCGGGACGCCGG
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--937--7611Chr03:18193708..18193732 (25 bp)
GGGACGCCGGCGGTGCCACGGACGA
LOC_Os03g31880
OsAffx.25332.1.S1_x_at--876--3812Chr06:13902512..13902536 (25 bp)
CTGCCGGAGCGTTCCTTGCGTGGAA
NONE
Target Sequence 
CAACTGCGTAAACGCGCTGCGCGGGGTCGCGCGGGGGCGCGACGCGTTCGTGGCGTCGCTCCGGCGCCTGGAGCCGCGCG
TGGTCACCGTCGTGGAGGAGGAGGCCGACCTGGCGGCGCCGGAGGCGGACGCGTCGTCGGAGGCCGACACCGACGCCGCG
TTCGTCAAGGTGTTCGGCGAGGGCCTCCGCTTCTTCTCGGCGTACATGGACTCGCTGGAGGAGAGCTTCCCCAAGACAAG
CAACGAGAGGCTGTCACTGGAGAGGGCGGTCGGCCGTGCCATCGTCGACCTCGTGTCATGCCCGGCCTCCCAGTCCGCCG
AGCGCCGGGAGACCGCCGCGTCGTGGGCGCGGCGCATGCGGTCGGCGGGGTTCTCGCCGGCGGCATTCAGCGAGGACGTC
GCCGACGACGTGCGGTCGCTTCTCCGGCGGTACAAGGAGGGCTGGTCGATGCGGGACGCCGGCGGTGCCACGGACGACGC
CGCCGGCGCCGCTGCTGCCGGAGCGTTCCTTGCGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25332.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis