Browse Element(s) Details


Os.12101.2.A1_a_at

Description gb:CB626981
DB_XREF= gi:29621970
DB_XREF=OSIIEb01J14.r
CLONE=OSIIEb01J14
TID=Os.12101.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12101 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176116.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3183911/11Transposable element protein, putative, MuDR, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein
LOC_Os03g31839Os.12101.2.A1_a_at11/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.15659.1.S1_at2/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.26827.1.S1_at1/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31870OsAffx.13151.1.S1_x_at7/113+18177960..18178382hypothetical protein
LOC_Os03g31874NANA3+18182780..18183218NA
LOC_Os03g31880OsAffx.25332.1.S1_x_at11/113+18193626..18195632GRAS family transcription factor containing protein, expressed
LOC_Os03g31890NANA3+18197517..18200443transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12101.2.A1_a_at--536--4171Chr03:18169280..18169304 (25 bp)
CGCCATCTTCTCCATGGTCAGAAAA
LOC_Os03g31839
Os.12101.2.A1_a_at--429--7971Chr03:18169308..18169332 (25 bp)
GGATCCTATTGCATCAACTTCCAAA
LOC_Os03g31839
Os.12101.2.A1_a_at--706--9711Chr03:18169350..18169374 (25 bp)
TCAAGGAGCTGAGGCCACAGAACGA
LOC_Os03g31839
Os.12101.2.A1_a_at--378--871Chr03:18169382..18169406 (25 bp)
ATGGCGCTGTCTCTGTTGCTAATTC
LOC_Os03g31839
Os.12101.2.A1_a_at--955--5231Chr03:18169414..18169438 (25 bp)
GAATCGAGACCCGTCTTTGAAGACA
LOC_Os03g31839
Os.12101.2.A1_a_at--537--2071Chr03:18169439..18169463 (25 bp)
ACATTGTTCTGGGTTTAGCTCTTGA
LOC_Os03g31839
Os.12101.2.A1_a_at--491--8131Chr03:18169475..18169499 (25 bp)
GGACATTACCAATTGATGACGGAAT
LOC_Os03g31839
Os.12101.2.A1_a_at--874--8191Chr03:18169495..18169519 (25 bp)
GGAATGAACCCTCATCTATCACTTT
LOC_Os03g31839
Os.12101.2.A1_a_at--1150--10171Chr03:18169638..18169662 (25 bp)
TATATTTGTCACCAAGCCTACCTTT
LOC_Os03g31839
Os.12101.2.A1_a_at--707--5191Chr03:18169682..18169706 (25 bp)
GCAATCTGTCAAACCTGTCTATGTC
LOC_Os03g31839
Os.12101.2.A1_a_at--638--8851Chr03:18169715..18169739 (25 bp)
TGATCGTCGCTGATACTATTCAGGA
LOC_Os03g31839
Target Sequence 
CGCCATCTTCTCCATGGTCAGAAAATATGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCT
GAGGCCACAGAACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAAGACAA
CATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGAGGACATTACCAATTGATGACGGAATGAACCCTCATCTATCACTTT
CTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCNCCGAAGGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAAT
CTTGATAGGTGATCTGAGTTTAAACCGATTATTTATGCTATATTTGTCACCAAGCCTACCTTTTTTTTGTGCTTGTGCAA
ATGCAATCTGTCAAACCTGTCTATGTCAAAGGTACTGATCGTCGCTGATACTATTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12101.2.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis