Browse Element(s) Details


Os.7329.1.S1_s_at

Description gb:AY341827.1
DB_XREF= gi:33519167
TID=Os.7329.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7329 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
PROD=AP2 domain-containing protein AP29
FL= gb:AY341827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4255011/11AP2 domain containing protein, expressed
LOC_Os03g318001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7329.1.S1_s_at--23--7791Chr08:26762038..26762062 (25 bp)
GGTGCCGGCGCATCTGAGGCCACAC
LOC_Os08g42550
Os.7329.1.S1_s_at--744--1511Chr08:26762150..26762174 (25 bp)
AGCAGCTACGCGCACATACTGCAGA
LOC_Os08g42550
Os.7329.1.S1_s_at--490--2091Chr08:26762163..26762187 (25 bp)
ACATACTGCAGAGCGGCGACCTGGA
LOC_Os08g42550
Os.7329.1.S1_s_at--381--5891Chr08:26762173..26762197 (25 bp)
GAGCGGCGACCTGGAGTACGACTTC
LOC_Os08g42550
Os.7329.1.S1_s_at--112--6091Chr08:26762186..26762210 (25 bp)
GAGTACGACTTCCACGCCGCGGTTT
LOC_Os08g42550
Os.7329.1.S1_s_at--457--6831Chr08:26762207..26762231 (25 bp)
GTTTCTGCCGGACTAACGACGACAG
LOC_Os08g42550
Os.7329.1.S1_s_at--308--4531Chr08:26762269..26762293 (25 bp)
GCCGCCATCCGAGGATCTTGACTAT
LOC_Os08g42550
Os.7329.1.S1_s_at--963--7951Chr08:26762281..26762305 (25 bp)
GGATCTTGACTATAAGCCTCCCTTT
LOC_Os08g42550
Os.7329.1.S1_s_at--81--4471Chr08:26762296..26762320 (25 bp)
GCCTCCCTTTGGACCATCTAATTAA
LOC_Os08g42550
Os.7329.1.S1_s_at--493--8092Chr08:26762306..26762330 (25 bp)
GGACCATCTAATTAATCTACTGATT
LOC_Os08g42550
Os.7329.1.S1_s_at--869--2231Chr08:26762383..26762407 (25 bp)
AAATTCTGCATTTTAGGAGTACAAC
LOC_Os08g42550
Target Sequence 
GGTGCCGGCGCATCTGAGGCCACACTTCAGCCTCGCCGGCGGCCAGAGCACCACACCGGCGCCCGCAGCCGCCGCCGTCG
CCGCTCCGCCGCGGGAGGAGTTCCCCGACCTCAGCAGCTACGCGCACATACTGCAGAGCGGCGACCTGGAGTACGACTTC
CACGCCGCGGTTTCTGCCGGACTAACGACGACAGCTGGGCGATCGTCGTCGTCGTCGTCATTGTCGATGCCGCCGCCATC
CGAGGATCTTGACTATAAGCCTCCCTTTGGACCATCTAATTAATCTACTGATTATTCAAATTAGCATAGATAGNTAACCC
TTTACAAAATCAGGGGGAAATTCTGAAATTCTGCATTTTAGGAGTACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7329.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis