Browse Element(s) Details


OsAffx.17477.1.S1_s_at

Description tigr:9636.m04323
TID=OsAffx.17477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4249011/11DC1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42470Os.14318.1.S1_at10/118+26708223..26710424bHLH transcription factor GBOF-1, putative, expressed
LOC_Os08g42480OsAffx.17476.1.S1_x_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480OsAffx.17476.1.S1_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480Os.51366.1.S1_at1/118+26717621..26720200hypothetical protein
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17477.1.S1_s_at--897--4631Chr08:26729530..26729554 (25 bp)
GCGTTCGCAGATGCGTCGAGTGCAA
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--802--1291Chr08:26729522..26729546 (25 bp)
AGATGCGTCGAGTGCAACGCCGTCG
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--506--7491Chr08:26729457..26729481 (25 bp)
GTGGTCGTACCAGTGCCAGACGTGC
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--995--1131Chr08:26729446..26729470 (25 bp)
AGTGCCAGACGTGCCCGGACAGCGA
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--1074--1391Chr08:26729440..26729464 (25 bp)
AGACGTGCCCGGACAGCGAGCTCTG
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--702--9111Chr08:26729375..26729399 (25 bp)
TGCTGCTGTGGCCAATGCGTGTGCG
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--826--3231Chr08:26729313..26729337 (25 bp)
CAACGCCATGGGACACTTCATCCAT
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--334--8651Chr08:26729305..26729329 (25 bp)
TGGGACACTTCATCCATGAGCTCTT
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--938--691Chr08:26729290..26729314 (25 bp)
ATGAGCTCTTCCGTGGATGCACTGG
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--937--9551Chr08:26729284..26729308 (25 bp)
TCTTCCGTGGATGCACTGGACTTAG
LOC_Os08g42490
OsAffx.17477.1.S1_s_at--558--3991Chr08:26729279..26729303 (25 bp)
CGTGGATGCACTGGACTTAGTTTCA
LOC_Os08g42490
Target Sequence 
GCGTTCGCAGATGCGTCGAGTGCAACGCCGTCGCCGGCGGCGGCGGCGGCGGCGGCAGGCAGGTGGTGCGGGCGTGGTCG
TACCAGTGCCAGACGTGCCCGGACAGCGAGCTCTGCCTCGCCTGCGCGCTCGGTCGCGACGGCGTCCCGCCGTGCTGCTG
CTGTGGCCAATGCGTGTGCGGCGGCGGCTGCTTCGTCGGCTGCGCCGGGTTGGCGGGCAACGCCATGGGACACTTCATCC
ATGAGCTCTTCCGTGGATGCACTGGACTTAGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17477.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis