Browse Element(s) Details


OsAffx.17476.1.S1_at

Description tigr:9636.m04322
TID=OsAffx.17476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g424809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42460NANA8+26696917..26697682hypothetical protein
LOC_Os08g42470Os.14318.1.S1_at10/118+26708223..26710424bHLH transcription factor GBOF-1, putative, expressed
LOC_Os08g42480OsAffx.17476.1.S1_x_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480OsAffx.17476.1.S1_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480Os.51366.1.S1_at1/118+26717621..26720200hypothetical protein
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17476.1.S1_at--1093--1971Chr08:26719439..26719459 (21 bp)
ACTCTGACCACTATCAAGGTAAGGG
LOC_Os08g42480
OsAffx.17476.1.S1_at--1044--9471NONE
TCTGACCACTATCAAGGTAAGGGTG
NONE
OsAffx.17476.1.S1_at--703--5831NONE
GACCACTATCAAGGTAAGGGTGGAT
NONE
OsAffx.17476.1.S1_at--839--1171Chr08:26720139..26720163 (25 bp)
AGTACTGCGGTGGTCTGGTCAGCAA
LOC_Os08g42480
OsAffx.17476.1.S1_at--761--6991Chr08:26720140..26720164 (25 bp)
GTACTGCGGTGGTCTGGTCAGCAAT
LOC_Os08g42480
OsAffx.17476.1.S1_at--963--9911Chr08:26720141..26720165 (25 bp)
TACTGCGGTGGTCTGGTCAGCAATA
LOC_Os08g42480
OsAffx.17476.1.S1_at--219--1991Chr08:26720142..26720166 (25 bp)
ACTGCGGTGGTCTGGTCAGCAATAA
LOC_Os08g42480
OsAffx.17476.1.S1_at--220--3831Chr08:26720143..26720167 (25 bp)
CTGCGGTGGTCTGGTCAGCAATAAA
LOC_Os08g42480
OsAffx.17476.1.S1_at--903--9131Chr08:26720144..26720168 (25 bp)
TGCGGTGGTCTGGTCAGCAATAAAC
LOC_Os08g42480
OsAffx.17476.1.S1_at--906--4671Chr08:26720145..26720169 (25 bp)
GCGGTGGTCTGGTCAGCAATAAACA
LOC_Os08g42480
OsAffx.17476.1.S1_at--934--3971Chr08:26720146..26720170 (25 bp)
CGGTGGTCTGGTCAGCAATAAACAG
LOC_Os08g42480
Target Sequence 
ACTCTGACCACTATCAAGGTAAGGGTGGATGGTCTGAACATGGAGTACTGCGGTGGTCTGGTCAGCAATAAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis