Browse Element(s) Details


Os.8094.1.S1_at

Description gb:AK059388.1
DB_XREF= gi:32969406
TID=Os.8094.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H03, full insert sequence.
FL= gb:AK059388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4254011/11Ubiquitin thiolesterase protein OTUB1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8094.1.S1_at--488--9951Chr08:26750641..26750665 (25 bp)
TACGACATTCTCTACCCGAAGTGAT
LOC_Os08g42540
Os.8094.1.S1_at--843--4111Chr08:26750625..26750649 (25 bp)
CGAAGTGATTCTTGCCCGGTGAAGC
LOC_Os08g42540
Os.8094.1.S1_at--316--5391Chr08:26750605..26750629 (25 bp)
GAAGCATTGTTGGTTTTTTCCTCAT
LOC_Os08g42540
Os.8094.1.S1_at--1106--5571Chr08:26750569..26750593 (25 bp)
GAAATCGCTGTCTAGAACTCTGTAG
LOC_Os08g42540
Os.8094.1.S1_at--175--2551Chr08:26750554..26750578 (25 bp)
AACTCTGTAGTTATGGTGCTCGTGC
LOC_Os08g42540
Os.8094.1.S1_at--471--2311Chr08:26750501..26750525 (25 bp)
AAAGGACTTGTGCTCTTGGTCTTGG
LOC_Os08g42540
Os.8094.1.S1_at--1110--10671Chr08:26750445..26750469 (25 bp)
TTGCCACTACCCAAATATCTCAGAT
LOC_Os08g42540
Os.8094.1.S1_at--763--1271Chr08:26750424..26750448 (25 bp)
AGATCGGTAGTTTTTCCCTGCGTCA
LOC_Os08g42540
Os.8094.1.S1_at--330--3831Chr08:26750407..26750431 (25 bp)
CTGCGTCAAGTCTACTCTGGTACAA
LOC_Os08g42540
Os.8094.1.S1_at--63--3171Chr08:26750269..26750293 (25 bp)
AATTCCATTTTCCTTGTTGAGCTTG
LOC_Os08g42540
Os.8094.1.S1_at--323--10831Chr08:26750214..26750238 (25 bp)
TTGTGCCGTACTATCATTGAACCAG
LOC_Os08g42540
Target Sequence 
TACGACATTCTCTACCCGAAGTGATTCTTGCCCGGTGAAGCATTGTTGGTTTTTTCCTCATGGCCAGTTTGAGAAATCGC
TGTCTAGAACTCTGTAGTTATGGTGCTCGTGCATGCCACCAAAGGCCGGCCTTACAAAGAAAAGGACTTGTGCTCTTGGT
CTTGGGTGGTGAACTGGTGATCAAGGCATGCTTTGCTTGCCACTACCCAAATATCTCAGATCGGTAGTTTTTCCCTGCGT
CAAGTCTACTCTGGTACAAACGATCTTGACATTGTGGTGTTGACTGTTGAGAAGATTCTGTTGATACTGTTACTAATCCT
CTCTTACTCACCTGCATCATAAATTGATAGTGCATGCTTTGTCATGGCAACTAATTCCATTTTCCTTGTTGAGCTTGTTG
AGCAATTCTACAGGTTGCTGTGTTGAGTTGTGCCGTACTATCATTGAACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis