Browse Element(s) Details


OsAffx.17479.1.S1_x_at

Description tigr:9636.m04331
TID=OsAffx.17479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17479.1.S1_x_at--752--5751Chr08:26773228..26773252 (25 bp)
GACGTCACGTTCGACCGGCGTGGCG
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--776--831Chr08:26773258..26773282 (25 bp)
ATGGAGATCCCGACGGCGGAGAACT
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--853--4091Chr08:26773268..26773292 (25 bp)
CGACGGCGGAGAACTACGCGAACCG
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--145--3931Chr08:26773271..26773295 (25 bp)
CGGCGGAGAACTACGCGAACCGCGC
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--358--1571Chr08:26773360..26773384 (25 bp)
AGCTACGCGCTCCTCATGGCGTCGC
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--299--4151Chr08:26773487..26773511 (25 bp)
CGCCGGAGGCCGTGAACAACTGCTA
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--165--7371Chr08:26773498..26773522 (25 bp)
GTGAACAACTGCTACGGCGAGGTGT
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--64--9931Chr08:26773522..26773546 (25 bp)
TACGGCGGCGTGAGGGAGTACTGCG
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--913--7371Chr08:26773531..26773555 (25 bp)
GTGAGGGAGTACTGCGGCCGGAGCT
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--836--9131Chr08:26773574..26773598 (25 bp)
TGCTGGCGCACGACTACTTCAGCAA
LOC_Os08g42570
OsAffx.17479.1.S1_x_at--222--10531Chr08:26773591..26773615 (25 bp)
TTCAGCAACCCGTGGACGAGCATGT
LOC_Os08g42570
Target Sequence 
GACGTCACGTTCGACCGGCGTGGCGGCGTGATGGAGATCCCGACGGCGGAGAACTACGCGAACCGCGCCATGCTCGCCAA
CCTGGTGGCGTACGAGCAGAGCCGGGGGCGGCGGGAGATGCAGCGGGTGGCGAGCTACGCGCTCCTCATGGCGTCGCTCG
CCGACGGGCGGCGCGACGCGGAGGCGCTGCACCGCGCCGGGGTGCTCGCCGGGGGGGACGTGGACGAGGCGGCGGCGTTC
TACGCGCACCTGTGCCCGCCGCCGGAGGCCGTGAACAACTGCTACGGCGAGGTGTACGGCGGCGTGAGGGAGTACTGCGG
CCGGAGCTGGAACCGCCACCGCGCCGTGCTGGCGCACGACTACTTCAGCAACCCGTGGACGAGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17479.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis