Browse Element(s) Details


Os.11790.1.S1_at

Description gb:AK119836.1
DB_XREF= gi:37989459
TID=Os.11790.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-B03, full insert sequence.
FL= gb:AK119836.1 gb:AK068997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4256011/11Glycyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006426biological_processglycyl-tRNA aminoacylation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004820molecular_functionglycine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11790.1.S1_at--192--1491Chr08:26771299..26771323 (25 bp)
AGCACCTGGGCCGATGTTTCATTTA
LOC_Os08g42560
Os.11790.1.S1_at--630--6831Chr08:26771314..26771338 (25 bp)
GTTTCATTTAAGTATCCCAGCCATA
LOC_Os08g42560
Os.11790.1.S1_at--1066--3371Chr08:26771331..26771355 (25 bp)
CAGCCATATTGGTCCCCAGGGTGAT
LOC_Os08g42560
Os.11790.1.S1_at--1022--1111Chr08:26771360..26771384 (25 bp)
AGTGAAAATCCTGAACCCTGTTCCA
LOC_Os08g42560
Os.11790.1.S1_at--440--1451Chr08:26771386..26771410 (25 bp)
AGAAGCACCCCAAATGGCCGTTGAT
LOC_Os08g42560
Os.11790.1.S1_at--1133--2251Chr08:26771423..26771447 (25 bp)
AAATAGTTCTTCCTCGTTTCATGCA
LOC_Os08g42560
Os.11790.1.S1_at--945--3091Chr08:26771478..26771502 (25 bp)
AATATACAACTCTTGGACGCCCTTA
LOC_Os08g42560
Os.11790.1.S1_at--66--9891Chr08:26771501..26771525 (25 bp)
TACATCTCTCCATTGTTCTTTTTGC
LOC_Os08g42560
Os.11790.1.S1_at--7--10391Chr08:26771583..26771607 (25 bp)
TTTTCTGCTGAATTCGTCCTGTTAA
LOC_Os08g42560
Os.11790.1.S1_at--154--4992Chr08:26771619..26771643 (25 bp)
GCACCAAGAATTGTTCACCTACCTT
LOC_Os08g42560
Os.11790.1.S1_at--445--7011Chr08:26771705..26771729 (25 bp)
GTACTCAGATTGTCTTGTCTCTAGT
LOC_Os08g42560
Target Sequence 
AGCACCTGGGCCGATGTTTCATTTAAGTATCCCAGCCATATTGGTCCCCAGGGTGATCAGGAGTGAAAATCCTGAACCCT
GTTCCAAAGAAGCACCCCAAATGGCCGTTGATTGACTTGAGGAGAAATAGTTCTTCCTCGTTTCATGCAATCTGGCAAGA
ACAAAGTTTGTCATACACAAATATACAACTCTTGGACGCCCTTACATCTCTCCATTGTTCTTTTTGCTCTCTTTCAAAAG
TTTCACCTGATTTACATGTTCACAATACAGAACATAGCATTTGATTTTCTGCTGAATTCGTCCTGTTAACTTGTAAGGTC
GCACCAAGAATTGTTCACCTACCTTCAAAGTTCCAANCAAACGAGCTGAAGCTTTGAGTTATTANNNTTCTTAGACTCTT
AGTTGTTGTACTCAGATTGTCTTGTCTCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis