Browse Element(s) Details


Os.49952.1.S1_at

Description gb:AK119425.1
DB_XREF= gi:37989048
TID=Os.49952.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H07, full insert sequence.
FL= gb:AK119425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4255011/11AP2 domain containing protein, expressed
LOC_Os12g279501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein
LOC_Os08g42530Os.50416.1.S1_at11/118+26738434..26747143ARF-GAP, putative, expressed
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49952.1.S1_at--884--8791Chr08:26760921..26760945 (25 bp)
TGTTCGGACAGCAAGGTACGCTGAT
LOC_Os08g42550
Os.49952.1.S1_at--398--6991Chr08:26760936..26760960 (25 bp)
GTACGCTGATCGATATTGGATACTT
LOC_Os08g42550
Os.49952.1.S1_at--95--7951Chr08:26760953..26760977 (25 bp)
GGATACTTGGTTTTGTGATCGATTA
LOC_Os08g42550
Os.49952.1.S1_at--589--8851Chr08:26760968..26760992 (25 bp)
TGATCGATTACACATGGCTTCTACT
LOC_Os08g42550
Os.49952.1.S1_at--1051--10572Chr12:16479879..16479938 (24 bp)
TTCTACTTCCTCTGTCTTTGTATAT
LOC_Os12g27950
Os.49952.1.S1_at--88--6471Chr08:26761023..26761047 (25 bp)
GATAATTCGATCTTCTTCGTCATGA
LOC_Os08g42550
Os.49952.1.S1_at--345--6431Chr08:26761031..26761055 (25 bp)
GATCTTCTTCGTCATGAATCACCTA
LOC_Os08g42550
Os.49952.1.S1_at--48--671Chr08:26761044..26761068 (25 bp)
ATGAATCACCTAGTTTGGAGGCATT
LOC_Os08g42550
Os.49952.1.S1_at--668--611Chr08:26761123..26761147 (25 bp)
ATGCTGACGAATAACATAGGCTCAA
LOC_Os08g42550
Os.49952.1.S1_at--140--271Chr08:26761167..26761191 (25 bp)
ATATGATTGTCTATATAGCCCAGAA
LOC_Os08g42550
Os.49952.1.S1_at--117--5592Chr08:26761201..26761225 (25 bp)
GAAATCATATGAACTTTGGGACAAA
LOC_Os08g42550
Target Sequence 
TGTTCGGACAGCAAGGTACGCTGATCGATATTGGATACTTGGTTTTGTGATCGATTACACATGGCTTCTACTTCCTCTGT
CTTTGTATATTGTAATTCTCCAGATAATTCGATCTTCTTCGTCATGAATCACCTAGTTTGGAGGCATTACCAAATGGAAA
AGGCTACACGTACAAAAAGAAATTGTTATAATTTTTTTACTAATGCTGACGAATAACATAGGCTCAAATTAGTGAGCAGA
TACTATATATGATTGTCTATATAGCCCAGAAAATTTCAGGGAAATCATATGAACTTTGGGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis