Browse Element(s) Details


OsAffx.2538.1.S1_at

Description tigr:9630.m00703
TID=OsAffx.2538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0755011/11Gamma-thionins family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07510NANA2+3886548..3888154hypothetical protein
LOC_Os02g07520OsAffx.22699.1.S1_x_at2/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520Os.45161.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520OsAffx.16451.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07530NANA2+3898794..3901738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g07540NANA2+3902055..3908150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g07550OsAffx.2538.1.S1_at11/112+3909434..3910005Gamma-thionins family protein, expressed
LOC_Os02g07560NANA2+3912861..3916103transposon protein, putative, unclassified
LOC_Os02g07570NANA2+3916725..3922880transposon protein, putative, unclassified
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2538.1.S1_at--322--5051Chr02:3909654..3909678 (25 bp)
GCAGCACGTTCAGAGGCAACTGCGA
LOC_Os02g07550
OsAffx.2538.1.S1_at--842--1491Chr02:3909656..3909680 (25 bp)
AGCACGTTCAGAGGCAACTGCGAGA
LOC_Os02g07550
OsAffx.2538.1.S1_at--1087--3331Chr02:3909658..3909682 (25 bp)
CACGTTCAGAGGCAACTGCGAGATC
LOC_Os02g07550
OsAffx.2538.1.S1_at--323--6751Chr02:3909661..3909685 (25 bp)
GTTCAGAGGCAACTGCGAGATCGAC
LOC_Os02g07550
OsAffx.2538.1.S1_at--352--9631Chr02:3909663..3909687 (25 bp)
TCAGAGGCAACTGCGAGATCGACGG
LOC_Os02g07550
OsAffx.2538.1.S1_at--1072--9811Chr02:3909722..3909746 (25 bp)
TACACCGACGGGTACTGCTTCACCG
LOC_Os02g07550
OsAffx.2538.1.S1_at--721--1771Chr02:3909725..3909749 (25 bp)
ACCGACGGGTACTGCTTCACCGAGG
LOC_Os02g07550
OsAffx.2538.1.S1_at--701--5751Chr02:3909728..3909752 (25 bp)
GACGGGTACTGCTTCACCGAGGTCG
LOC_Os02g07550
OsAffx.2538.1.S1_at--15--1931Chr02:3909729..3909753 (25 bp)
ACGGGTACTGCTTCACCGAGGTCGC
LOC_Os02g07550
OsAffx.2538.1.S1_at--734--7831Chr02:3909732..3909756 (25 bp)
GGTACTGCTTCACCGAGGTCGCCAA
LOC_Os02g07550
OsAffx.2538.1.S1_at--452--1031Chr02:3909747..3909771 (25 bp)
AGGTCGCCAACCCTGGCTACCACGT
LOC_Os02g07550
Target Sequence 
GCAGCACGTTCAGAGGCAACTGCGAGATCGACGGCGGCGGCTGCGTGGAGTCGTGCAGGGGCGAGGGGTACACCGACGGG
TACTGCTTCACCGAGGTCGCCAACCCTGGCTACCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis