Browse Element(s) Details


Os.23520.1.A1_at

Description gb:CA759867
DB_XREF= gi:25803906
DB_XREF=BR060007A10B02.ab1
CLONE=BR060007A10B02.ab1
TID=Os.23520.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23520 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g075804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07540NANA2+3902055..3908150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g07550OsAffx.2538.1.S1_at11/112+3909434..3910005Gamma-thionins family protein, expressed
LOC_Os02g07560NANA2+3912861..3916103transposon protein, putative, unclassified
LOC_Os02g07570NANA2+3916725..3922880transposon protein, putative, unclassified
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative
LOC_Os02g07610Os.26886.1.S1_x_at10/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610Os.26886.3.S1_x_at5/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610OsAffx.16244.1.S1_x_at1/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23520.1.A1_at--725--1531Chr02:3927427..3927451 (25 bp)
AGCTTGGAAAATCAGCAGTGTGCAA
NONE
Os.23520.1.A1_at--70--5031Chr02:3927441..3927465 (25 bp)
GCAGTGTGCAACTTCGGCAGAAGAA
NONE
Os.23520.1.A1_at--474--7511Chr02:3927475..3927499 (25 bp)
GTGGTTTGAGCTCCGAGAATCAGAT
NONE
Os.23520.1.A1_at--978--3431Chr02:3927495..3927519 (25 bp)
CAGATTGCTCAAACTGATCAGTGAG
NONE
Os.23520.1.A1_at--633--10311Chr02:3927536..3927560 (25 bp)
TTTCTCAGGATGATTGCGCCTCACA
NONE
Os.23520.1.A1_at--350--9691Chr02:3927556..3927858 (25 bp)
TCACATTTCAGTTCATTTCAGGTCA
NONE
Os.23520.1.A1_at--148--6751Chr02:3927844..3927868 (25 bp)
GTTCATTTCAGGTCACTGTTGATTC
NONE
Os.23520.1.A1_at--436--6431Chr02:3928149..3928173 (25 bp)
GATCATCACCGGTGAGATCCTGATG
LOC_Os02g07580
Os.23520.1.A1_at--659--6371Chr02:3928164..3928188 (25 bp)
GATCCTGATGGTCGATTGGTCACTG
LOC_Os02g07580
Os.23520.1.A1_at--133--10851Chr02:3928179..3928203 (25 bp)
TTGGTCACTGAAGACGCCGGCAGAA
LOC_Os02g07580
Os.23520.1.A1_at--503--6034Chr05:26100548..26101057 (25 bp)
GAGATATAACTATGTACTCCCTCCG
NONE
Target Sequence 
AGCTTGGAAAATCAGCAGTGTGCAACTTCGGCAGAAGAAATGCTTTTGGTGGTTTGAGCTCCGAGAATCAGATTGCTCAA
ACTGATCAGTGAGGATTATATGTTTTTTTTTCTCAGGATGATTGCGCCTCACATTTCAGTTCATTTCAGGTCACTGTTGA
TTCTGCCATGGAGGCCAAAATTGGAGCCACAGCCATGGTCCTGCTCCTCCTGGCCTTTGGTGTTGTTGGTGAGGCCAAGA
CACATGAATACCGCAGCCATACCTTCAAAGGCGTCTGCATCCACGACGATCTCTGGAAGTACTGCGTCAGGGTGAGATCT
AGGTACGATGGATCATCACCGGTGAGATCCTGATGGTCGATTGGTCACTGAAGACGCCGGCAGAAGGAGATATAACTATG
TACTCCCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23520.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis