Browse Element(s) Details


OsAffx.25401.1.S1_at

Description tigr:9631.m03599
TID=OsAffx.25401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3754011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37490Os.6998.1.S1_at11/113+20747776..20754379MATE efflux family protein, expressed
LOC_Os03g37500NANA3+20759571..20766975retrotransposon protein, putative, unclassified
LOC_Os03g37520OsAffx.25399.1.S1_at11/113+20770570..20771257hypothetical protein
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein
LOC_Os03g37554Os.40288.1.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37554Os.41248.4.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37570Os.9559.1.S1_at11/113+20792579..20794424expressed protein
LOC_Os03g37570OsAffx.3422.1.S1_s_at11/113+20792579..20794424expressed protein
LOC_Os03g37580Os.24640.1.A1_at11/113+20796877..20801512Modifier of rudimentary protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25401.1.S1_at--1002--6831Chr03:20778619..20778643 (25 bp)
GTTTCTCTGCGCGAGGGAAGCGACA
LOC_Os03g37540
OsAffx.25401.1.S1_at--438--7851Chr03:20776839..20776863 (25 bp)
GGTAGCCTTCCAGCTGGGTGCGAAC
LOC_Os03g37540
OsAffx.25401.1.S1_at--107--5451Chr03:20776818..20776842 (25 bp)
GAACGGTGGCCGTGTCCTATTCTCT
LOC_Os03g37540
OsAffx.25401.1.S1_at--721--4491Chr03:20776810..20776834 (25 bp)
GCCGTGTCCTATTCTCTTTGTTGGA
LOC_Os03g37540
OsAffx.25401.1.S1_at--617--10571Chr03:20776799..20776823 (25 bp)
TTCTCTTTGTTGGAGGTGGACAGCT
LOC_Os03g37540
OsAffx.25401.1.S1_at--376--3831Chr03:20776776..20776800 (25 bp)
CTGCGGCAGCAACCTTAGCTTCTAC
LOC_Os03g37540
OsAffx.25401.1.S1_at--699--4311Chr03:20776764..20776788 (25 bp)
CCTTAGCTTCTACCCAGGCCATAGG
LOC_Os03g37540
OsAffx.25401.1.S1_at--1136--8211Chr03:20776730..20776754 (25 bp)
GGCAAGGGTGTAATGACTGGCCTCA
LOC_Os03g37540
OsAffx.25401.1.S1_at--1139--671Chr03:20776718..20776742 (25 bp)
ATGACTGGCCTCAGTGTGGGAAGCA
LOC_Os03g37540
OsAffx.25401.1.S1_at--955--2711Chr03:20776698..20776722 (25 bp)
AAGCAGGCGCCGACAAGGGTGTCAA
LOC_Os03g37540
OsAffx.25401.1.S1_at--1072--8191Chr03:20776673..20776697 (25 bp)
GGAAGTGCGACCTTTCTTTCAAGAA
LOC_Os03g37540
Target Sequence 
GTTTCTCTGCGCGAGGGAAGCGACAGTCGCCGGGGAGGGGGGGGAGGGGGGTTCTTCAGGCAGGGCGGCGGCAGATCTGG
CACCACCGCCGCCGGATCTACAACGGCAGAGACCGAAAGTGGGGCATGGTGGCAGGCGGTAGCCTTCCAGCTGGGTGCGA
ACGGTGGCCGTGTCCTATTCTCTTTGTTGGAGGTGGACAGCTGCGGCAGCAACCTTAGCTTCTACCCAGGCCATAGGGGA
GGATTAGGCAAGGGTGTAATGACTGGCCTCAGTGTGGGAAGCAGGCGCCGACAAGGGTGTCAAGGAAGTGCGACCTTTCT
TTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis