Browse Element(s) Details


Os.24640.1.A1_at

Description gb:AK061375.1
DB_XREF= gi:32971393
TID=Os.24640.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F12, full insert sequence.
FL= gb:AK061375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3758011/11Modifier of rudimentary protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37540OsAffx.25401.1.S1_at11/113+20776641..20778676hypothetical protein
LOC_Os03g37554Os.40288.1.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37554Os.41248.4.S1_x_at1/113+20781198..20788366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37570Os.9559.1.S1_at11/113+20792579..20794424expressed protein
LOC_Os03g37570OsAffx.3422.1.S1_s_at11/113+20792579..20794424expressed protein
LOC_Os03g37580Os.24640.1.A1_at11/113+20796877..20801512Modifier of rudimentary protein, expressed
LOC_Os03g37610Os.10827.1.S1_x_at10/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37610Os.46055.2.S1_x_at6/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37620NANA3+20816860..20817222hypothetical protein
LOC_Os03g37630OsAffx.25936.1.S1_s_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.1.S1_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.7.S1_s_at7/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.2.S1_x_at4/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.5.S1_x_at3/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37640Os.11650.1.S1_at11/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640OsAffx.25398.1.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24640.1.A1_at--931--3091Chr03:20797853..20797877 (25 bp)
AATTTGGAAAAGGAACAGCGGATCT
LOC_Os03g37580
Os.24640.1.A1_at--59--6051Chr03:20797633..20797850 (25 bp)
GAGATTAGGAATCAGTGCACTATTA
LOC_Os03g37580
Os.24640.1.A1_at--712--9091Chr03:20797586..20797610 (25 bp)
TGCTCAGGATAGGTTGGCTGATTTA
LOC_Os03g37580
Os.24640.1.A1_at--860--6151Chr03:20797546..20797570 (25 bp)
GAGGTTATGAAGTCGTATTCCCCTG
LOC_Os03g37580
Os.24640.1.A1_at--314--711Chr03:20797129..20797153 (25 bp)
ATGAGGAGTCTGAGGAGCTGCATCA
LOC_Os03g37580
Os.24640.1.A1_at--378--1751Chr03:20797081..20797105 (25 bp)
ACCTCCCTACCTTTGTGCAGAAGCA
LOC_Os03g37580
Os.24640.1.A1_at--818--2731Chr03:20797055..20797079 (25 bp)
AAGAAGCTCCGAACTGCCTACCACA
LOC_Os03g37580
Os.24640.1.A1_at--389--8231Chr03:20797007..20797031 (25 bp)
GGCAAGACCTCGGTTCGCTGAGATC
LOC_Os03g37580
Os.24640.1.A1_at--562--3831Chr03:20796990..20797014 (25 bp)
CTGAGATCCGTCACCCTATTGTTGT
LOC_Os03g37580
Os.24640.1.A1_at--470--6951Chr03:20796903..20796927 (25 bp)
GTAGAGCTTGCCAAACATCATATTT
LOC_Os03g37580
Os.24640.1.A1_at--830--3551Chr03:20796888..20796912 (25 bp)
CATCATATTTGGACTGCATGTAGTA
LOC_Os03g37580
Target Sequence 
AATTTGGAAAAGGAACAGCGGATCTNGGAGATTAGGAATCAGTGCACTATTATAAGAACTACAGAACTAGCTGCTGCTCA
GGATAGGTTGGCTGATTTAGAAAGGCAAAGGGATGAGGTTATGAAGTCGTATTCCCCTGNTGCACTGCTCGACAAGCTCC
AAAAATTGATGGCGAAGTTAGATGAGGAGTCTGAGGAGCTGCATCAGAAGTTCCTGGAGAAGGACATTGACCTCCCTACC
TTTGTGCAGAAGCACAAGAAGCTCCGAACTGCCTACCACAAGCAGGCATTGCTCCATCTCGCCGGCAAGACCTCGGTTCG
CTGAGATCCGTCACCCTATTGTTGTNNNNATNNNNNTNNNNNNNATTNTNTNNTGCGATAGGCTGTTTATAAGTGCTGCT
TAAAATTGTAGAGCTTGCCAAACATCATATTTGGACTGCATGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24640.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis