Browse Element(s) Details


Os.11650.1.S1_at

Description gb:AK102204.1
DB_XREF= gi:32987413
TID=Os.11650.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087G07, full insert sequence.
FL= gb:AK102204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3764011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37580Os.24640.1.A1_at11/113+20796877..20801512Modifier of rudimentary protein, expressed
LOC_Os03g37610Os.10827.1.S1_x_at10/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37610Os.46055.2.S1_x_at6/113+20812439..20816377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37620NANA3+20816860..20817222hypothetical protein
LOC_Os03g37630OsAffx.25936.1.S1_s_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.1.S1_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.7.S1_s_at7/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.2.S1_x_at4/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.5.S1_x_at3/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37640Os.11650.1.S1_at11/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640OsAffx.25398.1.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37650OsAffx.30842.1.S1_at1/113+20836249..20841219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37670OsAffx.25403.1.S1_at11/113+20846134..20849684SRF-type transcription factor family protein
LOC_Os03g37680OsAffx.7616.1.S1_at1/113+20852148..20854259hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11650.1.S1_at--979--8311Chr03:20824325..20824349 (25 bp)
GGCTGCTACTATATCGTCGGTGTTC
LOC_Os03g37640
Os.11650.1.S1_at--682--7751Chr03:20824295..20824319 (25 bp)
GGTGTTCTTCTTGGGTTCGTCTTCA
LOC_Os03g37640
Os.11650.1.S1_at--1155--5471Chr03:20824119..20824143 (25 bp)
GAACATGCATGCAGACGGCCATTCT
LOC_Os03g37640
Os.11650.1.S1_at--234--7191Chr03:20824093..20824117 (25 bp)
GTCTGGGTCACCTTGAGAACTGATT
LOC_Os03g37640
Os.11650.1.S1_at--535--2311Chr03:20823350..20823374 (25 bp)
AAAGGAGCCACTTCTTACAGGGATT
LOC_Os03g37640
Os.11650.1.S1_at--1039--1891Chr03:20823270..20823294 (25 bp)
ACGTCGCCAGCATTTGCTTTGATAT
LOC_Os03g37640
Os.11650.1.S1_at--729--231Chr03:20823249..20823273 (25 bp)
ATATTTTCTACCAGCATGGCGCATG
LOC_Os03g37640
Os.11650.1.S1_at--1132--6431Chr03:20823208..20823232 (25 bp)
GATCAGGCATATATCCGAGTTGGGA
LOC_Os03g37640
Os.11650.1.S1_at--434--5571Chr03:20823176..20823200 (25 bp)
GAAAGATGTGCTTCATTGAGCTCAA
LOC_Os03g37640
Os.11650.1.S1_at--374--7871Chr03:20823122..20823146 (25 bp)
GGTTTACTTCCTTTTGGGACATCTG
LOC_Os03g37640
Os.11650.1.S1_at--610--791Chr03:20823094..20823118 (25 bp)
ATGTGGAACGATGCCTACTGAAACC
LOC_Os03g37640
Target Sequence 
GGCTGCTACTATATCGTCGGTGTTCCCCTTGGTGTTCTTCTTGGGTTCGTCTTCAAGCTTGGTGTAAAGGGCATCTGGGG
TGGGATGCTTGGAGGAACATGCATGCAGACGGCCATTCTTGTCTGGGTCACCTTGAGAACTGATTGGAACAATGAGGTCG
AGGAAGCACAGAAAAGGTTGAACAAGTGGGAGGACAAGAAAAAGGAGCCACTTCTTACAGGGATTAGGGACAACAACTAA
GTTGATGAATCAAGATTTCTTGTCAGTTCAACTATCCCCCACGTCGCCAGCATTTGCTTTGATATTTTCTACCAGCATGG
CGCATGCAGAGGGAAACTGCAGGATCAGGCATATATCCGAGTTGGGAGACCAGTGAAAGATGTGCTTCATTGAGCTCAAA
TCTGGTTTACAATAACATTAGGTCATGTGGTTTACTTCCTTTTGGGACATCTGGAGATGTGGAACGATGCCTACTGAAAC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis