Browse Element(s) Details


OsAffx.25439.1.S1_at

Description tigr:9631.m03809
TID=OsAffx.25439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3962911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25439.1.S1_at--865--7591Chr03:21966105..21966129 (25 bp)
GGGCATAGCAGTAGTGATTGTTTCA
LOC_Os03g39629
OsAffx.25439.1.S1_at--707--6591Chr03:21966090..21966114 (25 bp)
GATTGTTTCAGTTGAGATCGAGGAT
LOC_Os03g39629
OsAffx.25439.1.S1_at--746--5991Chr03:21966065..21966089 (25 bp)
GAGACGATCATGAATAAGCTCGGAT
LOC_Os03g39629
OsAffx.25439.1.S1_at--1059--8991Chr03:21966055..21966079 (25 bp)
TGAATAAGCTCGGATACCCAGCCCT
LOC_Os03g39629
OsAffx.25439.1.S1_at--835--311Chr03:21966042..21966066 (25 bp)
ATACCCAGCCCTTGCTGATGAGTTT
LOC_Os03g39629
OsAffx.25439.1.S1_at--156--8871Chr03:21966027..21966051 (25 bp)
TGATGAGTTTCAGTTGCAAGTTTTG
LOC_Os03g39629
OsAffx.25439.1.S1_at--1039--6651Chr03:21966015..21966039 (25 bp)
GTTGCAAGTTTTGAGCTCGAGGACA
LOC_Os03g39629
OsAffx.25439.1.S1_at--956--8911Chr03:21966004..21966028 (25 bp)
TGAGCTCGAGGACAATAGCAATTGT
LOC_Os03g39629
OsAffx.25439.1.S1_at--933--5191Chr03:21965987..21966011 (25 bp)
GCAATTGTGCATGAGGCGAGATCAA
LOC_Os03g39629
OsAffx.25439.1.S1_at--59--2451Chr03:21965751..21965987 (25 bp)
AACAAGGTGACAACCACAACTATGG
LOC_Os03g39629
OsAffx.25439.1.S1_at--680--3291Chr03:21965737..21965963 (25 bp)
CACAACTATGGTTCTAAGCTTGCGC
LOC_Os03g39629
Target Sequence 
GGGCATAGCAGTAGTGATTGTTTCAGTTGAGATCGAGGATGAGACGATCATGAATAAGCTCGGATACCCAGCCCTTGCTG
ATGAGTTTCAGTTGCAAGTTTTGAGCTCGAGGACAATAGCAATTGTGCATGAGGCGAGATCAAACAAGGTGACAACCACA
ACTATGGTTCTAAGCTTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis