Browse Element(s) Details


OsAffx.25548.1.S1_at

Description tigr:9631.m04347
TID=OsAffx.25548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4493011/11hypothetical protein
LOC_Os10g249801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g052101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed
LOC_Os03g44910OsAffx.3516.1.S1_x_at11/113+25309533..25310171hypothetical protein
LOC_Os03g44920OsAffx.25550.2.S1_s_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44920OsAffx.25550.1.S1_at11/113+25310883..25312427F-box domain containing protein
LOC_Os03g44930OsAffx.25548.1.S1_at11/113+25319731..25321556hypothetical protein
LOC_Os03g44934NANA3+25322949..25323476hypothetical protein
LOC_Os03g44940NANA3+25326954..25329566retrotransposon protein, putative, unclassified
LOC_Os03g44950NANA3+25331302..25335455expressed protein
LOC_Os03g44970OsAffx.25549.1.S1_at11/113+25342628..25342984hypothetical protein
LOC_Os03g44974OsAffx.7693.1.S1_x_at1/113+25344284..25344547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25548.1.S1_at--1134--9231Chr03:25319821..25319845 (25 bp)
TCCATTGCCATGACGGGCTGGCTTC
LOC_Os03g44930
OsAffx.25548.1.S1_at--562--4091Chr03:25319974..25319998 (25 bp)
CGACGATCTAGGGTTTTGCTGAGAG
LOC_Os03g44930
OsAffx.25548.1.S1_at--639--7831Chr03:25320938..25320962 (25 bp)
GGTAACAATAATCACGTGCCTGATG
LOC_Os03g44930
OsAffx.25548.1.S1_at--963--1892Chr03:25320951..25320975 (25 bp)
ACGTGCCTGATGATCCTTATTCTAA
LOC_Os03g44930
OsAffx.25548.1.S1_at--754--4371Chr03:25321066..25321090 (25 bp)
CCAACCTTGTGCCTGACCAATATAG
LOC_Os03g44930
OsAffx.25548.1.S1_at--25--6071Chr03:25321090..25321114 (25 bp)
GAGTTCGACAAGCTACTACTGAGTT
LOC_Os03g44930
OsAffx.25548.1.S1_at--211--10631Chr03:25321123..25321147 (25 bp)
TTGCTTATATTTGGTGGGTTGGGTT
LOC_Os03g44930
OsAffx.25548.1.S1_at--1019--7632Chr10:12527283..12527306 (24 bp)
GGGAGAGCTTTACCTACTAATTGGA
LOC_Os10g24980
OsAffx.25548.1.S1_at--241--2831Chr03:25321435..25321458 (24 bp)
AAGTTTGCTATGCTAGTCAACGGGC
LOC_Os03g44930
OsAffx.25548.1.S1_at--558--10051Chr03:25321447..25321471 (25 bp)
TAGTCAACGGGCATAGTTTGCTATG
LOC_Os03g44930
OsAffx.25548.1.S1_at--408--392Chr03:25321484..25321508 (25 bp)
ATCAGCACCTCCGACGTTGAAGACG
LOC_Os03g44930
Target Sequence 
TCCATTGCCATGACGGGCTGGCTTCCCGTGCCGCTGGCGCTGGTCGTCCGGGGGAGCTTGCCAGCGCCAATGGCCGCCCG
GGGGGTTGCCATCCTCGCCGCACGGCTGATTTGCCGTCCTCGCCGCCTGAGGGGTCGCCATCCATGGGGGCGGCGACGAT
CTAGGGTTTTGCTGAGAGGCGCGCGCGGGTTGGGGAAAACAGGTATGGGTGGCACTCAAAATCAGCGATACCAACAAGGT
AACAATAATCACGTGCCTGATGATCCTTATTCTAAGATGAGTGTAGAGCAAAAGTTTAGTGCCAACCTTGTGCCTGACCA
ATATAGAGTTCGACAAGCTACTACTGAGTTTAAAGAATTTGCTTATATTTGGTGGGTTGGGTTAGATGTAGGGAGAGCTT
TACCTACTAATTGGAAAGAACTTAAGTTTGCTATGCTAGTCAACGGGCATAGTTTGCTATGGAAGATGGCTACATCAGCA
CCTCCGACGTTGAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis