Browse Element(s) Details


OsAffx.25616.2.S1_x_at

Description gb:NM_188706.1
DB_XREF= gi:34904495
GEN=OSJNBa0010K01.9
TID=OsAffx.25616.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.9 (OSJNBa0010K01.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1381011/11expressed protein
LOC_Os01g138602/11hypothetical protein
LOC_Os03g479201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25616.2.S1_x_at--411--1171Chr01:7741514..7741538 (25 bp)
AGTACCTGGTCGTCGAGTTCAAGTT
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--1002--7791Chr01:7741521..7741545 (25 bp)
GGTCGTCGAGTTCAAGTTCATCGTT
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--1144--8551Chr01:7741630..7741654 (25 bp)
TGGATCTGGAGATGCTTCGACGTCG
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--635--1291Chr01:7741639..7741663 (25 bp)
AGATGCTTCGACGTCGGTTCCTACG
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--230--4492Chr01:7741663..7741687 (25 bp)
GCCGGCAAGCTCTACTGGGTGGACA
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--151--5792Chr01:7769416..7769440 (25 bp)
GACGAGCCGCACATGGAGTACGTCC
LOC_Os01g13860
OsAffx.25616.2.S1_x_at--946--5491Chr01:7741774..7741798 (25 bp)
GAACACGACGAGGACTGCCACGGCT
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--501--8112Chr01:7769643..7769667 (25 bp)
GGACGCTTGAGTACGCCGTGAGCTT
LOC_Os01g13860
OsAffx.25616.2.S1_x_at--368--7431Chr01:7742082..7742106 (25 bp)
GTGTACTTCTTCGTGGAGGACCAGC
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--821--5511Chr01:7742118..7742264 (25 bp)
GAAAATTTGCACTTAGCACACGAGA
LOC_Os01g13810
OsAffx.25616.2.S1_x_at--304--9031Chr01:7742248..7742271 (24 bp)
TGCACTTAGCACACGAGAAGACGAC
LOC_Os01g13810
Target Sequence 
AGTACCTGGTCGTCGAGTTCAAGTTCATCGTTGGCGGCGACAAGGCCACCCTCCTCTGCTTCTCGTCCGAGACCGGCCTG
TGGGAGAAGAAGCCCGTCAACAACCCCCTGCCCCGCTGGATCTGGAGATGCTTCGACGTCGGTTCCTACGCCGGCAAGCT
CTACTGGGTGGACACCGCGGCGGGCCTCCTCTTCTGCGACCCGTTCGTCGACGAGCCGCACATGGAGTACGTCCCGCTCC
CCAGGGTCGAGCTCCCGCCAGAACACGACGAGGACTGCCACGGCTGCGACTACTGCGCCGAGAGAGCGTTCGTCTCCCGC
CGCTGCGTGCGGCTGAGCGACGGCAAGTTCAGGGAGGCAGGGACCAAGGTGTGGACGCTTGAGTACGCCGTGAGCTTCGC
CGACCTCTGGGCCAGCGAGAGCTACAAGGCGGCTGGGCTGCCGGAGAAGGCCCCGGTGCTCGCGCTCGTCCACCCCAAGA
ACCCCGACGTGGTGTACTTCTTCGTGGAGGACCAGCTCGTCGGGGAAGAAAATTTGCACTTAGCACACGAGAAGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25616.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis