Browse Element(s) Details


OsAffx.25616.3.S1_at

Description gb:NM_188707.1
DB_XREF= gi:34904497
GEN=OSJNBa0010K01.10
TID=OsAffx.25616.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.10 (OSJNBa0010K01.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25616.3.S1_at--509--3831Chr01:7742941..7742965 (25 bp)
CTGCGTCTGTCTTCTCGCGTGCTAA
LOC_Os01g13810
OsAffx.25616.3.S1_at--704--6811Chr01:7742949..7742973 (25 bp)
GTCTTCTCGCGTGCTAACGGCGTTA
LOC_Os01g13810
OsAffx.25616.3.S1_at--909--10571Chr01:7742952..7742974 (23 bp)
TTCTCGCGTGCTAACGGCGTTAGAG
LOC_Os01g13810
OsAffx.25616.3.S1_at--295--1054Chr02:16677816..16677840 (25 bp)
AGGGTTTGAGGGAGTTATCTGCTTT
NONE
OsAffx.25616.3.S1_at--832--10253Chr01:7742993..7743017 (25 bp)
TTTGAGGGAGTTATCTGCTTTGAGA
LOC_Os01g13810
OsAffx.25616.3.S1_at--635--6072Chr01:7743000..7743024 (25 bp)
GAGTTATCTGCTTTGAGATTGTAAC
LOC_Os01g13810
OsAffx.25616.3.S1_at--1162--6591Chr01:7743016..7743040 (25 bp)
GATTGTAACAGAACACGTGTCGCAC
LOC_Os01g13810
OsAffx.25616.3.S1_at--704--8731Chr01:7743019..7743043 (25 bp)
TGTAACAGAACACGTGTCGCACAAG
LOC_Os01g13810
OsAffx.25616.3.S1_at--259--2151Chr01:7743023..7743047 (25 bp)
ACAGAACACGTGTCGCACAAGAGAT
LOC_Os01g13810
OsAffx.25616.3.S1_at--785--2473Chr03:35554201..35554224 (24 bp)
AACACGTGTCGCACAAGAGATTAAG
NONE
OsAffx.25616.3.S1_at--1005--7451Chr01:7743032..7743056 (25 bp)
GTGTCGCACAAGAGATTAAGTTTTT
LOC_Os01g13810
Target Sequence 
CTGCGTCTGTCTTCTCGCGTGCTAACGGCGTTAGAGGGTTTGAGGGAGTTATCTGCTTTGAGATTGTAACAGAACACGTG
TCGCACAAGAGATTAAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25616.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis