Browse Element(s) Details


OsAffx.25617.1.S1_at

Description tigr:9631.m04678
TID=OsAffx.25617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25617.1.S1_at--346--911Chr03:27289050..27289074 (25 bp)
AGGCGTCGTGGCTATGCCGACAATG
LOC_Os03g48070
OsAffx.25617.1.S1_at--807--4011Chr03:27289053..27289077 (25 bp)
CGTCGTGGCTATGCCGACAATGGCA
LOC_Os03g48070
OsAffx.25617.1.S1_at--464--8311Chr03:27289059..27289083 (25 bp)
GGCTATGCCGACAATGGCAAGACAA
LOC_Os03g48070
OsAffx.25617.1.S1_at--788--2951Chr03:27289071..27289095 (25 bp)
AATGGCAAGACAAGGTGGAACAGGA
LOC_Os03g48070
OsAffx.25617.1.S1_at--1128--2431Chr03:27289138..27289162 (25 bp)
AAAAGGGTGGGAGTTGCCATCGCTA
LOC_Os03g48070
OsAffx.25617.1.S1_at--298--7491Chr03:27289144..27289168 (25 bp)
GTGGGAGTTGCCATCGCTAGCGGCG
LOC_Os03g48070
OsAffx.25617.1.S1_at--738--3691Chr03:27289175..27289199 (25 bp)
CTAGTGGGACGTGGCCGGCAAACCT
LOC_Os03g48070
OsAffx.25617.1.S1_at--384--7811Chr03:27289212..27289236 (25 bp)
GGTCGGCTCCCGTGTCTATTTAGGA
LOC_Os03g48070
OsAffx.25617.1.S1_at--905--3911Chr03:27289215..27289239 (25 bp)
CGGCTCCCGTGTCTATTTAGGAGAA
LOC_Os03g48070
OsAffx.25617.1.S1_at--504--7131Chr03:27289225..27289246 (22 bp)
GTCTATTTAGGAGAACGGCACGATC
LOC_Os03g48070
OsAffx.25617.1.S1_at--831--971Chr03:27289233..27289397 (25 bp)
AGGAGAACGGCACGATCATCCCAAT
LOC_Os03g48070
Target Sequence 
AGGCGTCGTGGCTATGCCGACAATGGCAAGACAAGGTGGAACAGGAGAAAAACGAGGAAGGGAAAGGAAGAGGGAAGGAG
GAGGGAAGAAAAGGGTGGGAGTTGCCATCGCTAGCGGCGGCGACGCTAGTGGGACGTGGCCGGCAAACCTCCTCTCGGGG
CTGGTCGGCTCCCGTGTCTATTTAGGAGAACGGCACGATCATCCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis