Browse Element(s) Details


OsAffx.25711.1.S1_at

Description tigr:9631.m05316
TID=OsAffx.25711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5411410/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54059NANA3+30945684..30947253expressed protein
LOC_Os03g54070NANA3+30949559..30949912hypothetical protein
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25711.1.S1_at--94--5151Chr03:30973013..30973037 (25 bp)
GCAACAGTTGAAACGACAGCCGATG
LOC_Os03g54114
OsAffx.25711.1.S1_at--143--6031Chr03:30972989..30973012 (24 bp)
GAGAGGATTCGTGTCGACATCAGGA
LOC_Os03g54114
OsAffx.25711.1.S1_at--977--5351Chr03:30972475..30972499 (25 bp)
GAAGAGTACAACCTCCTCCAAGTAT
LOC_Os03g54114
OsAffx.25711.1.S1_at--400--5251NONE
GAATCCAGAGACATGTGGCCCGTAG
NONE
OsAffx.25711.1.S1_at--722--1311Chr03:30971563..30971587 (25 bp)
AGATGGGTCCTCTCCAGAATGGGTG
LOC_Os03g54114
OsAffx.25711.1.S1_at--39--2791Chr03:30971533..30971553 (21 bp)
AAGAGAACTGTCCAGCTCGAGTCTA
LOC_Os03g54114
OsAffx.25711.1.S1_at--1019--1891Chr03:30971388..30971412 (25 bp)
ACGTCAGCCATTGCCTAACAGGTGA
LOC_Os03g54114
OsAffx.25711.1.S1_at--1097--5311Chr03:30970486..30970508 (23 bp)
GAAGTTTTTCTTAGTAATCCCATGG
LOC_Os03g54114
OsAffx.25711.1.S1_at--645--551Chr03:30970450..30970474 (25 bp)
ATCCTTACATAGTGGCAATCCCTAC
LOC_Os03g54114
OsAffx.25711.1.S1_at--588--7531Chr03:30970439..30970463 (25 bp)
GTGGCAATCCCTACCAAAACATTGA
LOC_Os03g54114
OsAffx.25711.1.S1_at--1077--8051Chr03:30970414..30970438 (25 bp)
GGAGAATCTGATCATCACACTAGAG
LOC_Os03g54114
Target Sequence 
GCAACAGTTGAAACGACAGCCGATGGAGAGGATTCGTGTCGACATCAGGAGAAAGTTCAAGGATGGAATTGAAGTTTCAG
AGAAGTTCAGAGATAAGAGACTACAACATGATAAAGAGAATGGCTCTGCTGAAGAGTACAACCTCCTCCAAGTATACCAC
TGCTGGAGCCTGAAATTGAATGGCTTCATTGGTGAATCCAGAGACATGTGGCCCGTAGTGAAAAGGTCAGATGGGTCCTC
TCCAGAATGGGTGTGTCGAGAGAAGAGAACTGTCCAGCTCGAGTCTACCTCCAACTACGTCAGCCATTGCCTAACAGGTG
AATTGAAGTTTTTCTTAGTAATCCCATGGTTTTTGCAACAATCCTTACATAGTGGCAATCCCTACCAAAACATTGAGGAG
AATCTGATCATCACACTAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis